RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 TTC25Q96NG3 672 aa19.45■□□□□ 0.7
UPF3A-211ENST00000618700 OR2M4Q96R27 311 aa19.45■□□□□ 0.7
UPF3A-211ENST00000618700 LRRC61Q9BV99 259 aa19.45■□□□□ 0.7
UPF3A-211ENST00000618700 GTPBP2Q9BX10 602 aaKnown RBP19.45■□□□□ 0.7
UPF3A-211ENST00000618700 CARS2Q9HA77 564 aaKnown RBP19.45■□□□□ 0.7
UPF3A-211ENST00000618700 RXFP3Q9NSD7 469 aa19.45■□□□□ 0.7
UPF3A-211ENST00000618700 IARS2Q9NSE4 1012 aaKnown RBP19.45■□□□□ 0.7
UPF3A-211ENST00000618700 DNAAF2Q9NVR5 837 aaKnown RBP19.45■□□□□ 0.7
UPF3A-211ENST00000618700 H3BM21 787 aa19.44■□□□□ 0.7
UPF3A-211ENST00000618700 GRID2O43424 1007 aa19.44■□□□□ 0.7
UPF3A-211ENST00000618700 TNFP01375 233 aa19.44■□□□□ 0.7
UPF3A-211ENST00000618700 ATP1B2P14415 290 aaPredicted RBP19.44■□□□□ 0.7
UPF3A-211ENST00000618700 PMLP29590 882 aa19.44■□□□□ 0.7
UPF3A-211ENST00000618700 NSG1P42857 185 aa19.44■□□□□ 0.7
UPF3A-211ENST00000618700 GNPDA1P46926 289 aa19.44■□□□□ 0.7
UPF3A-211ENST00000618700 CCT8P50990 548 aa19.44■□□□□ 0.7
UPF3A-211ENST00000618700 NAA30Q147X3 362 aaPredicted RBP19.44■□□□□ 0.7
UPF3A-211ENST00000618700 KYNUQ16719 465 aa19.44■□□□□ 0.7
UPF3A-211ENST00000618700 BCL7AQ4VC05 210 aa19.44■□□□□ 0.7
UPF3A-211ENST00000618700 TEDDM1Q5T9Z0 273 aa19.44■□□□□ 0.7
UPF3A-211ENST00000618700 C3orf62Q6ZUJ4 267 aa19.44■□□□□ 0.7
UPF3A-211ENST00000618700 KANSL1Q7Z3B3 1105 aa19.44■□□□□ 0.7
UPF3A-211ENST00000618700 C11orf96Q7Z7L8 435 aa19.44■□□□□ 0.7
UPF3A-211ENST00000618700 LRRTM4Q86VH4 590 aa19.44■□□□□ 0.7
UPF3A-211ENST00000618700 GALNT13Q8IUC8 556 aa19.44■□□□□ 0.7
UPF3A-211ENST00000618700 C2CD4AQ8NCU7 369 aaPredicted RBP19.44■□□□□ 0.7
UPF3A-211ENST00000618700 NAT14Q8WUY8 206 aa19.44■□□□□ 0.7
UPF3A-211ENST00000618700 LPGAT1Q92604 370 aa19.44■□□□□ 0.7
UPF3A-211ENST00000618700 ZNF514Q96K75 400 aaPredicted RBP19.44■□□□□ 0.7
UPF3A-211ENST00000618700 EDEM2Q9BV94 578 aa19.44■□□□□ 0.7
UPF3A-211ENST00000618700 SLC13A1Q9BZW2 595 aa19.44■□□□□ 0.7
UPF3A-211ENST00000618700 P2RY12Q9H244 342 aa19.44■□□□□ 0.7
UPF3A-211ENST00000618700 INTS10Q9NVR2 710 aaKnown RBP19.44■□□□□ 0.7
UPF3A-211ENST00000618700 TRNAU1APQ9NX07 287 aaKnown RBP19.44■□□□□ 0.7
UPF3A-211ENST00000618700 SLC17A6Q9P2U8 582 aa19.44■□□□□ 0.7
UPF3A-211ENST00000618700 MOSPD1Q9UJG1 213 aa19.44■□□□□ 0.7
UPF3A-211ENST00000618700 FBXO5Q9UKT4 447 aa19.44■□□□□ 0.7
UPF3A-211ENST00000618700 RAB21Q9UL25 225 aa19.44■□□□□ 0.7
UPF3A-211ENST00000618700 FAM186AA6NE01 2351 aa19.43■□□□□ 0.7
UPF3A-211ENST00000618700 CDX4O14627 284 aaPredicted RBP19.43■□□□□ 0.7
UPF3A-211ENST00000618700 AP2A2O94973 939 aa19.43■□□□□ 0.7
UPF3A-211ENST00000618700 S1PR4O95977 384 aa19.43■□□□□ 0.7
UPF3A-211ENST00000618700 ZNF883P0CG24 379 aa19.43■□□□□ 0.7
UPF3A-211ENST00000618700 ZNF7P17097 686 aaPredicted RBP19.43■□□□□ 0.7
UPF3A-211ENST00000618700 PRLHRP49683 370 aa19.43■□□□□ 0.7
UPF3A-211ENST00000618700 ADARP55265 1226 aaKnown RBP19.43■□□□□ 0.7
UPF3A-211ENST00000618700 CTBP1Q13363 440 aa19.43■□□□□ 0.7
UPF3A-211ENST00000618700 ZNF789Q5FWF6 425 aa19.43■□□□□ 0.7
UPF3A-211ENST00000618700 CRTC3Q6UUV7 619 aa19.43■□□□□ 0.7
UPF3A-211ENST00000618700 KIAA0408Q6ZU52 694 aa19.43■□□□□ 0.7
UPF3A-211ENST00000618700 DET1Q7L5Y6 550 aa19.43■□□□□ 0.7
UPF3A-211ENST00000618700 RD3Q7Z3Z2 195 aa19.43■□□□□ 0.7
UPF3A-211ENST00000618700 GALNT7Q86SF2 657 aa19.43■□□□□ 0.7
UPF3A-211ENST00000618700 TRAPPC5Q8IUR0 188 aa19.43■□□□□ 0.7
UPF3A-211ENST00000618700 CLDN19Q8N6F1 224 aa19.43■□□□□ 0.7
UPF3A-211ENST00000618700 ZNF548Q8NEK5 533 aaPredicted RBP19.43■□□□□ 0.7
UPF3A-211ENST00000618700 GABPB2Q8TAK5 448 aaPredicted RBP19.43■□□□□ 0.7
UPF3A-211ENST00000618700 SGF29Q96ES7 293 aa19.43■□□□□ 0.7
UPF3A-211ENST00000618700 FUT8Q9BYC5 575 aa19.43■□□□□ 0.7
UPF3A-211ENST00000618700 PARD6BQ9BYG5 372 aa19.43■□□□□ 0.7
UPF3A-211ENST00000618700 TMEM168Q9H0V1 697 aa19.43■□□□□ 0.7
UPF3A-211ENST00000618700 PPANQ9NQ55 473 aaKnown RBP19.43■□□□□ 0.7
UPF3A-211ENST00000618700 SMYD2Q9NRG4 433 aa19.43■□□□□ 0.7
UPF3A-211ENST00000618700 GPR34Q9UPC5 381 aa19.43■□□□□ 0.7
UPF3A-211ENST00000618700 PRKAB1Q9Y478 270 aa19.43■□□□□ 0.7
UPF3A-211ENST00000618700 PRSS21Q9Y6M0 314 aa19.43■□□□□ 0.7
UPF3A-211ENST00000618700 DNAH14Q0VDD8 3507 aa19.43■□□□□ 0.7
UPF3A-211ENST00000618700 FAM159BA6NKW6 160 aa19.42■□□□□ 0.7
UPF3A-211ENST00000618700 OR2AG2A6NM03 316 aa19.42■□□□□ 0.7
UPF3A-211ENST00000618700 PRMT5O14744 637 aaPredicted RBP19.42■□□□□ 0.7
UPF3A-211ENST00000618700 SCAMP1O15126 338 aa19.42■□□□□ 0.7
UPF3A-211ENST00000618700 PFDN6O15212 129 aa19.42■□□□□ 0.7
UPF3A-211ENST00000618700 KMOO15229 486 aa19.42■□□□□ 0.7
UPF3A-211ENST00000618700 NDUFS3O75489 264 aa19.42■□□□□ 0.7
UPF3A-211ENST00000618700 F7P08709 466 aaPredicted RBP19.42■□□□□ 0.7
UPF3A-211ENST00000618700 RPS3P23396 243 aaKnown RBP eCLIP19.42■□□□□ 0.7
UPF3A-211ENST00000618700 DGKAP23743 735 aa19.42■□□□□ 0.7
UPF3A-211ENST00000618700 MCM3P25205 808 aa19.42■□□□□ 0.7
UPF3A-211ENST00000618700 STX2P32856 288 aa19.42■□□□□ 0.7
UPF3A-211ENST00000618700 ATXN3P54252 364 aaPredicted RBP19.42■□□□□ 0.7
UPF3A-211ENST00000618700 MPP1Q00013 466 aa19.42■□□□□ 0.7
UPF3A-211ENST00000618700 IL9RQ01113 521 aa19.42■□□□□ 0.7
UPF3A-211ENST00000618700 LRP8Q14114 963 aa19.42■□□□□ 0.7
UPF3A-211ENST00000618700 TMEM220Q6QAJ8 160 aa19.42■□□□□ 0.7
UPF3A-211ENST00000618700 LRRC6Q86X45 466 aa19.42■□□□□ 0.7
UPF3A-211ENST00000618700 GPBAR1Q8TDU6 330 aa19.42■□□□□ 0.7
UPF3A-211ENST00000618700 SAP25Q8TEE9 199 aa19.42■□□□□ 0.7
UPF3A-211ENST00000618700 LINC00615Q96LM1 132 aaPredicted RBP19.42■□□□□ 0.7
UPF3A-211ENST00000618700 TIMM29Q9BSF4 260 aa19.42■□□□□ 0.7
UPF3A-211ENST00000618700 CLPBQ9H078 707 aa19.42■□□□□ 0.7
UPF3A-211ENST00000618700 VPS37BQ9H9H4 285 aa19.42■□□□□ 0.7
UPF3A-211ENST00000618700 FBXO6Q9NRD1 293 aaPredicted RBP19.42■□□□□ 0.7
UPF3A-211ENST00000618700 TM7SF3Q9NS93 570 aa19.42■□□□□ 0.7
UPF3A-211ENST00000618700 ZFATQ9P243 1243 aa19.42■□□□□ 0.7
UPF3A-211ENST00000618700 SPASTQ9UBP0 616 aa19.42■□□□□ 0.7
UPF3A-211ENST00000618700 ZNHIT2Q9UHR6 403 aa19.42■□□□□ 0.7
UPF3A-211ENST00000618700 VPS9D1Q9Y2B5 631 aa19.42■□□□□ 0.7
UPF3A-211ENST00000618700 GPSM3Q9Y4H4 160 aa19.42■□□□□ 0.7
UPF3A-211ENST00000618700 ST14Q9Y5Y6 855 aa19.42■□□□□ 0.7
UPF3A-211ENST00000618700 CABIN1Q9Y6J0 2220 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms