RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 RHOT1Q8IXI2 618 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 RBM12BQ8IXT5 1001 aaKnown RBP12.31□□□□□ -0.44
TRIM28-212ENST00000597995 TRAM1L1Q8N609 369 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 GALNT6Q8NCL4 622 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 GPR26Q8NDV2 337 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 KLHL6Q8WZ60 621 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 GLYATL1Q969I3 302 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 STAMBPL1Q96FJ0 436 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 TGM7Q96PF1 710 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 FCRL4Q96PJ5 515 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 TIMM29Q9BSF4 260 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 SPATA16Q9BXB7 569 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 CEP41Q9BYV8 373 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 RAB33BQ9H082 229 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 OR2AG1Q9H205 316 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 MAGEE1Q9HCI5 957 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 POT1Q9NUX5 634 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 SAE1Q9UBE0 346 aaPredicted RBP12.31□□□□□ -0.44
TRIM28-212ENST00000597995 EPHA6Q9UF33 1036 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 SLC23A2Q9UGH3 650 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 PADI1Q9ULC6 663 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 PCDHA13Q9Y5I0 950 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 APOL1O14791 398 aa12.3□□□□□ -0.44
TRIM28-212ENST00000597995 MTSS1O43312 755 aa12.3□□□□□ -0.44
TRIM28-212ENST00000597995 SPAG6O75602 509 aa12.3□□□□□ -0.44
TRIM28-212ENST00000597995 CREG1O75629 220 aa12.3□□□□□ -0.44
TRIM28-212ENST00000597995 RFPL1O75677 317 aa12.3□□□□□ -0.44
TRIM28-212ENST00000597995 KIAA0754O94854 1291 aa12.3□□□□□ -0.44
TRIM28-212ENST00000597995 FURINP09958 794 aa12.3□□□□□ -0.44
TRIM28-212ENST00000597995 SEPHS1P49903 392 aa12.3□□□□□ -0.44
TRIM28-212ENST00000597995 PMS2P54278 862 aa12.3□□□□□ -0.44
TRIM28-212ENST00000597995 DYNLT1P63172 113 aa12.3□□□□□ -0.44
TRIM28-212ENST00000597995 SH3BP2P78314 561 aa12.3□□□□□ -0.44
TRIM28-212ENST00000597995 INSCQ1MX18 579 aa12.3□□□□□ -0.44
TRIM28-212ENST00000597995 AGAP9Q5VTM2 703 aa12.3□□□□□ -0.44
TRIM28-212ENST00000597995 ASB18Q6ZVZ8 466 aa12.3□□□□□ -0.44
TRIM28-212ENST00000597995 LRRTM4Q86VH4 590 aa12.3□□□□□ -0.44
TRIM28-212ENST00000597995 PPP1R3BQ86XI6 285 aa12.3□□□□□ -0.44
TRIM28-212ENST00000597995 RFX6Q8HWS3 928 aa12.3□□□□□ -0.44
TRIM28-212ENST00000597995 LURAP1LQ8IV03 231 aa12.3□□□□□ -0.44
TRIM28-212ENST00000597995 APLFQ8IW19 511 aaPredicted RBP12.3□□□□□ -0.44
TRIM28-212ENST00000597995 SEC14L1Q92503 715 aa12.3□□□□□ -0.44
TRIM28-212ENST00000597995 TADA1Q96BN2 335 aa12.3□□□□□ -0.44
TRIM28-212ENST00000597995 ZDHHC12Q96GR4 267 aa12.3□□□□□ -0.44
TRIM28-212ENST00000597995 MRFAP1L1Q96HT8 127 aa12.3□□□□□ -0.44
TRIM28-212ENST00000597995 TRIB3Q96RU7 358 aa12.3□□□□□ -0.44
TRIM28-212ENST00000597995 SLC40A1Q9NP59 571 aa12.3□□□□□ -0.44
TRIM28-212ENST00000597995 ARFGAP3Q9NP61 516 aa12.3□□□□□ -0.44
TRIM28-212ENST00000597995 DDX56Q9NY93 547 aaKnown RBP12.3□□□□□ -0.44
TRIM28-212ENST00000597995 REXO2Q9Y3B8 237 aaKnown RBP12.3□□□□□ -0.44
TRIM28-212ENST00000597995 SOWAHDA6NJG2 315 aa12.29□□□□□ -0.44
TRIM28-212ENST00000597995 PDZK1P1A8MUH7 402 aa12.29□□□□□ -0.44
TRIM28-212ENST00000597995 C21orf140B9A014 251 aa12.29□□□□□ -0.44
TRIM28-212ENST00000597995 K7EM74 188 aa12.29□□□□□ -0.44
TRIM28-212ENST00000597995 SPOPO43791 374 aa12.29□□□□□ -0.44
TRIM28-212ENST00000597995 KCNJ13O60928 360 aa12.29□□□□□ -0.44
TRIM28-212ENST00000597995 KATNA1O75449 491 aa12.29□□□□□ -0.44
TRIM28-212ENST00000597995 RASSF9O75901 435 aa12.29□□□□□ -0.44
TRIM28-212ENST00000597995 CDK14O94921 469 aa12.29□□□□□ -0.44
TRIM28-212ENST00000597995 BRAFP15056 766 aa12.29□□□□□ -0.44
TRIM28-212ENST00000597995 PECAM1P16284 738 aaPredicted RBP12.29□□□□□ -0.44
TRIM28-212ENST00000597995 NELFEP18615 380 aaKnown RBP12.29□□□□□ -0.44
TRIM28-212ENST00000597995 IDSP22304 550 aa12.29□□□□□ -0.44
TRIM28-212ENST00000597995 CAPZBP47756 277 aa12.29□□□□□ -0.44
TRIM28-212ENST00000597995 LEPRP48357 1165 aaKnown RBP12.29□□□□□ -0.44
TRIM28-212ENST00000597995 AP1B1Q10567 949 aa12.29□□□□□ -0.44
TRIM28-212ENST00000597995 DNASE1L3Q13609 305 aa12.29□□□□□ -0.44
TRIM28-212ENST00000597995 SLC14A2Q15849 920 aa12.29□□□□□ -0.44
TRIM28-212ENST00000597995 ZNF648Q5T619 568 aaPredicted RBP12.29□□□□□ -0.44
TRIM28-212ENST00000597995 CACHD1Q5VU97 1274 aa12.29□□□□□ -0.44
TRIM28-212ENST00000597995 ALS2CLQ60I27 953 aa12.29□□□□□ -0.44
TRIM28-212ENST00000597995 CRTC3Q6UUV7 619 aa12.29□□□□□ -0.44
TRIM28-212ENST00000597995 BPHLQ86WA6 291 aaPredicted RBP12.29□□□□□ -0.44
TRIM28-212ENST00000597995 CCDC170Q8IYT3 715 aa12.29□□□□□ -0.44
TRIM28-212ENST00000597995 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.29□□□□□ -0.44
TRIM28-212ENST00000597995 KRT35Q92764 455 aa12.29□□□□□ -0.44
TRIM28-212ENST00000597995 IMP4Q96G21 291 aaKnown RBP12.29□□□□□ -0.44
TRIM28-212ENST00000597995 ZNF830Q96NB3 372 aaPredicted RBP12.29□□□□□ -0.44
TRIM28-212ENST00000597995 PANX2Q96RD6 677 aa12.29□□□□□ -0.44
TRIM28-212ENST00000597995 SRPK1Q96SB4 655 aaKnown RBP12.29□□□□□ -0.44
TRIM28-212ENST00000597995 MAK16Q9BXY0 300 aaKnown RBP12.29□□□□□ -0.44
TRIM28-212ENST00000597995 BRD8Q9H0E9 1235 aa12.29□□□□□ -0.44
TRIM28-212ENST00000597995 PDE7BQ9NP56 450 aa12.29□□□□□ -0.44
TRIM28-212ENST00000597995 LHX9Q9NQ69 397 aa12.29□□□□□ -0.44
TRIM28-212ENST00000597995 SEMA5BQ9P283 1151 aa12.29□□□□□ -0.44
TRIM28-212ENST00000597995 LNPEPQ9UIQ6 1025 aa12.29□□□□□ -0.44
TRIM28-212ENST00000597995 TLK1Q9UKI8 766 aa12.29□□□□□ -0.44
TRIM28-212ENST00000597995 USP9XQ93008 2570 aaPredicted RBP12.29□□□□□ -0.44
TRIM28-212ENST00000597995 RP1L1Q8IWN7 2480 aaPredicted RBP12.28□□□□□ -0.44
TRIM28-212ENST00000597995 ZNF106Q9H2Y7 1883 aaKnown RBP12.28□□□□□ -0.44
TRIM28-212ENST00000597995 A0A0A6YYK5 440 aaPredicted RBP12.28□□□□□ -0.44
TRIM28-212ENST00000597995 PIPSLA2A3N6 862 aa12.28□□□□□ -0.44
TRIM28-212ENST00000597995 CDC14CA4D256 554 aa12.28□□□□□ -0.44
TRIM28-212ENST00000597995 PSTPIP1O43586 416 aa12.28□□□□□ -0.44
TRIM28-212ENST00000597995 KIF1CO43896 1103 aaKnown RBP12.28□□□□□ -0.44
TRIM28-212ENST00000597995 ZFXP17010 805 aaPredicted RBP12.28□□□□□ -0.44
TRIM28-212ENST00000597995 VCLP18206 1134 aa12.28□□□□□ -0.44
TRIM28-212ENST00000597995 NR1D1P20393 614 aa12.28□□□□□ -0.44
TRIM28-212ENST00000597995 MLLT10P55197 1068 aa12.28□□□□□ -0.44
TRIM28-212ENST00000597995 GPR18Q14330 331 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms