RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 SERPINA9Q86WD7 417 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 PPIL6Q8IXY8 311 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 SFRP1Q8N474 314 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 DCBLD1Q8N8Z6 715 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 AVL9Q8NBF6 648 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 OR6P1Q8NGX9 317 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 OR4L1Q8NH43 312 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 PATE1Q8WXA2 126 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 SH3KBP1Q96B97 665 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 LINC00615Q96LM1 132 aaPredicted RBP14.79□□□□□ -0.04
UPF1-202ENST00000594243 ZNF778Q96MU6 729 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 DEPDC7Q96QD5 511 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 CEP295Q9C0D2 2601 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 MRM3Q9HC36 420 aaKnown RBP14.79□□□□□ -0.04
UPF1-202ENST00000594243 XAB2Q9HCS7 855 aaKnown RBP14.79□□□□□ -0.04
UPF1-202ENST00000594243 PRDM8Q9NQV8 689 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 SLC2A6Q9UGQ3 507 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 ASIC3Q9UHC3 531 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 DNAJC16Q9Y2G8 782 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 ZNF106Q9H2Y7 1883 aaKnown RBP14.78□□□□□ -0.04
UPF1-202ENST00000594243 IGLV3-16A0A075B6K0 115 aa14.78□□□□□ -0.04
UPF1-202ENST00000594243 FAM149AA5PLN7 773 aa14.78□□□□□ -0.04
UPF1-202ENST00000594243 SDR42E2A6NKP2 422 aa14.78□□□□□ -0.04
UPF1-202ENST00000594243 EML2O95834 649 aa14.78□□□□□ -0.04
UPF1-202ENST00000594243 GOT2P00505 430 aaKnown RBP14.78□□□□□ -0.04
UPF1-202ENST00000594243 NSG1P42857 185 aa14.78□□□□□ -0.04
UPF1-202ENST00000594243 GPR3P46089 330 aa14.78□□□□□ -0.04
UPF1-202ENST00000594243 CRADDP78560 199 aa14.78□□□□□ -0.04
UPF1-202ENST00000594243 B4GALNT1Q00973 533 aa14.78□□□□□ -0.04
UPF1-202ENST00000594243 DHX34Q14147 1143 aaKnown RBP14.78□□□□□ -0.04
UPF1-202ENST00000594243 SPIDRQ14159 915 aa14.78□□□□□ -0.04
UPF1-202ENST00000594243 ITIH4Q14624 930 aa14.78□□□□□ -0.04
UPF1-202ENST00000594243 NR1D2Q14995 579 aa14.78□□□□□ -0.04
UPF1-202ENST00000594243 BCL7AQ4VC05 210 aa14.78□□□□□ -0.04
UPF1-202ENST00000594243 FASTKD1Q53R41 847 aaKnown RBP14.78□□□□□ -0.04
UPF1-202ENST00000594243 ANKRD22Q5VYY1 191 aa14.78□□□□□ -0.04
UPF1-202ENST00000594243 ABRAXAS1Q6UWZ7 409 aa14.78□□□□□ -0.04
UPF1-202ENST00000594243 WASH2PQ6VEQ5 465 aa14.78□□□□□ -0.04
UPF1-202ENST00000594243 ZNF438Q7Z4V0 828 aa14.78□□□□□ -0.04
UPF1-202ENST00000594243 CCNJLQ8IV13 435 aa14.78□□□□□ -0.04
UPF1-202ENST00000594243 NAT8LQ8N9F0 302 aa14.78□□□□□ -0.04
UPF1-202ENST00000594243 Q8N9G6 341 aaPredicted RBP14.78□□□□□ -0.04
UPF1-202ENST00000594243 SLC37A2Q8TED4 501 aa14.78□□□□□ -0.04
UPF1-202ENST00000594243 GRAMD1AQ96CP6 724 aa14.78□□□□□ -0.04
UPF1-202ENST00000594243 GFM1Q96RP9 751 aaKnown RBP14.78□□□□□ -0.04
UPF1-202ENST00000594243 KIFC1Q9BW19 673 aa14.78□□□□□ -0.04
UPF1-202ENST00000594243 LDHAL6BQ9BYZ2 381 aaPredicted RBP14.78□□□□□ -0.04
UPF1-202ENST00000594243 LRRN3Q9H3W5 708 aa14.78□□□□□ -0.04
UPF1-202ENST00000594243 WASH6PQ9NQA3 447 aa14.78□□□□□ -0.04
UPF1-202ENST00000594243 SAMD15Q9P1V8 674 aa14.78□□□□□ -0.04
UPF1-202ENST00000594243 RABGEF1Q9UJ41 708 aa14.78□□□□□ -0.04
UPF1-202ENST00000594243 C17orf113A0A1B0GUU1 675 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 A6NCN8 305 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 MGAT4DA6NG13 374 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 OR51F1A6NGY5 319 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 PRR19A6NJB7 356 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 PDZK1P1A8MUH7 402 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 GOLGA8MH3BSY2 632 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 QSOX1O00391 747 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 NTN3O00634 580 aaPredicted RBP14.77□□□□□ -0.05
UPF1-202ENST00000594243 DNALI1O14645 258 aaPredicted RBP14.77□□□□□ -0.05
UPF1-202ENST00000594243 PPM1DO15297 605 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 AVILO75366 819 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 TMEM63AO94886 807 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 AP2A2O94973 939 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 TUBB4AP04350 444 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 RPLP0P05388 317 aaKnown RBP14.77□□□□□ -0.05
UPF1-202ENST00000594243 PRSS56P0CW18 603 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 XRCC1P18887 633 aaPredicted RBP14.77□□□□□ -0.05
UPF1-202ENST00000594243 ALDH4A1P30038 563 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 FOXN2P32314 431 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 HALP42357 657 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 CLDN6P56747 220 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 CCL7P80098 99 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 HHEXQ03014 270 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 AARS2Q5JTZ9 985 aaKnown RBP14.77□□□□□ -0.05
UPF1-202ENST00000594243 AGAP9Q5VTM2 703 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 RBM44Q6ZP01 1051 aaKnown RBP14.77□□□□□ -0.05
UPF1-202ENST00000594243 SPRED1Q7Z699 444 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 CAND1Q86VP6 1230 aaKnown RBP14.77□□□□□ -0.05
UPF1-202ENST00000594243 PIANPQ8IYJ0 282 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 BEND7Q8N7W2 519 aaPredicted RBP14.77□□□□□ -0.05
UPF1-202ENST00000594243 OR2L2Q8NH16 312 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 SERPINB12Q96P63 405 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 SLC38A3Q99624 504 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 SYNDIG1Q9H7V2 258 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 VPS37BQ9H9H4 285 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 SARS2Q9NP81 518 aaKnown RBP14.77□□□□□ -0.05
UPF1-202ENST00000594243 TREX1Q9NSU2 369 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 SYBUQ9NX95 663 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 SOX13Q9UN79 622 aa14.77□□□□□ -0.05
UPF1-202ENST00000594243 ARID1BQ8NFD5 2236 aaPredicted RBP14.76□□□□□ -0.05
UPF1-202ENST00000594243 F8W8V4 182 aa14.76□□□□□ -0.05
UPF1-202ENST00000594243 SMAPO00193 183 aa14.76□□□□□ -0.05
UPF1-202ENST00000594243 B4GAT1O43505 415 aa14.76□□□□□ -0.05
UPF1-202ENST00000594243 GSTM1P09488 218 aa14.76□□□□□ -0.05
UPF1-202ENST00000594243 PAMP19021 973 aa14.76□□□□□ -0.05
UPF1-202ENST00000594243 RPL10P27635 214 aaKnown RBP14.76□□□□□ -0.05
UPF1-202ENST00000594243 NMBRP28336 390 aa14.76□□□□□ -0.05
UPF1-202ENST00000594243 PRLHRP49683 370 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms