RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 TMEM115Q12893 351 aaPredicted RBP16.56■□□□□ 0.24
CLN3-211ENST00000564091 IL11RAQ14626 422 aa16.56■□□□□ 0.24
CLN3-211ENST00000564091 NOMO1Q15155 1222 aa16.56■□□□□ 0.24
CLN3-211ENST00000564091 ASTE1Q2TB18 679 aaPredicted RBP16.56■□□□□ 0.24
CLN3-211ENST00000564091 AGAP9Q5VTM2 703 aa16.56■□□□□ 0.24
CLN3-211ENST00000564091 CCDC70Q6NSX1 233 aa16.56■□□□□ 0.24
CLN3-211ENST00000564091 PRSS42Q7Z5A4 293 aa16.56■□□□□ 0.24
CLN3-211ENST00000564091 TRAPPC5Q8IUR0 188 aa16.56■□□□□ 0.24
CLN3-211ENST00000564091 GDAP1Q8TB36 358 aa16.56■□□□□ 0.24
CLN3-211ENST00000564091 SLC35G2Q8TBE7 412 aa16.56■□□□□ 0.24
CLN3-211ENST00000564091 KLHL6Q8WZ60 621 aa16.56■□□□□ 0.24
CLN3-211ENST00000564091 RNF25Q96BH1 459 aaPredicted RBP16.56■□□□□ 0.24
CLN3-211ENST00000564091 CXorf40BQ96DE9 158 aa16.56■□□□□ 0.24
CLN3-211ENST00000564091 KCTD3Q9Y597 815 aa16.56■□□□□ 0.24
CLN3-211ENST00000564091 NBPF19A0A087WUL8 3843 aa16.55■□□□□ 0.24
CLN3-211ENST00000564091 CDC14CA4D256 554 aa16.55■□□□□ 0.24
CLN3-211ENST00000564091 ZNF487B1APH4 448 aa16.55■□□□□ 0.24
CLN3-211ENST00000564091 GOLGA6L19H0YKK7 550 aa16.55■□□□□ 0.24
CLN3-211ENST00000564091 PPP1R12AO14974 1030 aaPredicted RBP16.55■□□□□ 0.24
CLN3-211ENST00000564091 KRT1P04264 644 aa16.55■□□□□ 0.24
CLN3-211ENST00000564091 TMEM253P0C7T8 217 aa16.55■□□□□ 0.24
CLN3-211ENST00000564091 FGF5P12034 268 aa16.55■□□□□ 0.24
CLN3-211ENST00000564091 TNNT1P13805 278 aa16.55■□□□□ 0.24
CLN3-211ENST00000564091 KLRB1Q12918 225 aa16.55■□□□□ 0.24
CLN3-211ENST00000564091 TEX44Q53QW1 395 aa16.55■□□□□ 0.24
CLN3-211ENST00000564091 WASH2PQ6VEQ5 465 aa16.55■□□□□ 0.24
CLN3-211ENST00000564091 ZDHHC12Q96GR4 267 aa16.55■□□□□ 0.24
CLN3-211ENST00000564091 DEF6Q9H4E7 631 aa16.55■□□□□ 0.24
CLN3-211ENST00000564091 WASH6PQ9NQA3 447 aa16.55■□□□□ 0.24
CLN3-211ENST00000564091 SAE1Q9UBE0 346 aaPredicted RBP16.55■□□□□ 0.24
CLN3-211ENST00000564091 A0A0A6YYK5 440 aaPredicted RBP16.54■□□□□ 0.24
CLN3-211ENST00000564091 PIPSLA2A3N6 862 aa16.54■□□□□ 0.24
CLN3-211ENST00000564091 GPR39O43194 453 aa16.54■□□□□ 0.24
CLN3-211ENST00000564091 MTSS1O43312 755 aa16.54■□□□□ 0.24
CLN3-211ENST00000564091 TIAF1O95411 115 aa16.54■□□□□ 0.24
CLN3-211ENST00000564091 CCNYL3P0C7X3 344 aa16.54■□□□□ 0.24
CLN3-211ENST00000564091 ZFXP17010 805 aaPredicted RBP16.54■□□□□ 0.24
CLN3-211ENST00000564091 NELFEP18615 380 aaKnown RBP16.54■□□□□ 0.24
CLN3-211ENST00000564091 PTPN3P26045 913 aa16.54■□□□□ 0.24
CLN3-211ENST00000564091 CA5AP35218 305 aa16.54■□□□□ 0.24
CLN3-211ENST00000564091 GTF2H3Q13889 308 aa16.54■□□□□ 0.24
CLN3-211ENST00000564091 LLGL1Q15334 1064 aa16.54■□□□□ 0.24
CLN3-211ENST00000564091 PPP1R3BQ86XI6 285 aa16.54■□□□□ 0.24
CLN3-211ENST00000564091 RBM12BQ8IXT5 1001 aaKnown RBP16.54■□□□□ 0.24
CLN3-211ENST00000564091 GPR150Q8NGU9 434 aa16.54■□□□□ 0.24
CLN3-211ENST00000564091 TEKT5Q96M29 485 aa16.54■□□□□ 0.24
CLN3-211ENST00000564091 TTC25Q96NG3 672 aa16.54■□□□□ 0.24
CLN3-211ENST00000564091 VPS35Q96QK1 796 aa16.54■□□□□ 0.24
CLN3-211ENST00000564091 TWSG1Q9GZX9 223 aa16.54■□□□□ 0.24
CLN3-211ENST00000564091 IL26Q9NPH9 171 aa16.54■□□□□ 0.24
CLN3-211ENST00000564091 EPHA6Q9UF33 1036 aa16.54■□□□□ 0.24
CLN3-211ENST00000564091 KCND3Q9UK17 655 aa16.54■□□□□ 0.24
CLN3-211ENST00000564091 PADI1Q9ULC6 663 aa16.54■□□□□ 0.24
CLN3-211ENST00000564091 POLHQ9Y253 713 aa16.54■□□□□ 0.24
CLN3-211ENST00000564091 HYOU1Q9Y4L1 999 aa16.54■□□□□ 0.24
CLN3-211ENST00000564091 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.54■□□□□ 0.24
CLN3-211ENST00000564091 IGHV5-51A0A0C4DH38 117 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 F5H423 210 aaPredicted RBP16.53■□□□□ 0.24
CLN3-211ENST00000564091 UGT1A9O60656 530 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 POP7O75817 140 aaKnown RBP16.53■□□□□ 0.24
CLN3-211ENST00000564091 FOLR1P15328 257 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 VCLP18206 1134 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 UGT1A6P19224 532 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 UGT1A1P22309 533 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 UGT1A4P22310 534 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 CD68P34810 354 aaPredicted RBP16.53■□□□□ 0.24
CLN3-211ENST00000564091 HMGCLP35914 325 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 HALP42357 657 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 CHRNA4P43681 627 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 CTSCP53634 463 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 MLLT10P55197 1068 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 WNT3AP56704 352 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 DNASE1L3Q13609 305 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 KCNAB1Q14722 419 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 CHRNA6Q15825 494 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 SLC14A2Q15849 920 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.53■□□□□ 0.24
CLN3-211ENST00000564091 MFSD7Q6UXD7 560 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 CERS6Q6ZMG9 384 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 FAM83HQ6ZRV2 1179 aaPredicted RBP16.53■□□□□ 0.24
CLN3-211ENST00000564091 AMZ2Q86W34 360 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 VSIG1Q86XK7 387 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 TTC30BQ8N4P2 665 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 SLC25A41Q8N5S1 370 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 TEX19Q8NA77 164 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 CT55Q8WUE5 264 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 SRPK1Q96SB4 655 aaKnown RBP16.53■□□□□ 0.24
CLN3-211ENST00000564091 RUFY1Q96T51 708 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 XPO4Q9C0E2 1151 aaKnown RBP16.53■□□□□ 0.24
CLN3-211ENST00000564091 AKIRIN1Q9H9L7 192 aaPredicted RBP16.53■□□□□ 0.24
CLN3-211ENST00000564091 UGT1A7Q9HAW7 530 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 UGT1A10Q9HAW8 530 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 UGT1A8Q9HAW9 530 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 LHX9Q9NQ69 397 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 TLK1Q9UKI8 766 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 PSMD13Q9UNM6 376 aa16.53■□□□□ 0.24
CLN3-211ENST00000564091 GOLGA6L3A6NEY3 463 aa16.52■□□□□ 0.24
CLN3-211ENST00000564091 MKRN2OSH3BPM6 223 aa16.52■□□□□ 0.24
CLN3-211ENST00000564091 BUD23O43709 281 aaKnown RBP16.52■□□□□ 0.24
CLN3-211ENST00000564091 AKR1B10O60218 316 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms