RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 GPR179Q6PRD1 2367 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 SPTY2D1-AS1A0A0U1RR47 76 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 A0A1B0GTW7 788 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 PRSS38A1L453 326 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 IQCF5A8MTL0 148 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 TLR4O00206 839 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 VILLO15195 856 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 KELP23276 732 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 HTR1BP28222 390 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 SERPINB9P50453 376 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 AFF3P51826 1226 aaKnown RBP16.35■□□□□ 0.21
VPS4A-202ENST00000562754 PGGT1BP53609 377 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 CDKN2DP55273 166 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 NXPH1P58417 271 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 BNC1Q01954 994 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 EIF2B5Q13144 721 aaKnown RBP16.35■□□□□ 0.21
VPS4A-202ENST00000562754 GTF2H3Q13889 308 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 RASA2Q15283 850 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 TMED2Q15363 201 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 HECTD2Q5U5R9 776 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 PTRHD1Q6GMV3 140 aaKnown RBP16.35■□□□□ 0.21
VPS4A-202ENST00000562754 ZC3H14Q6PJT7 736 aaKnown RBP16.35■□□□□ 0.21
VPS4A-202ENST00000562754 TMEM220Q6QAJ8 160 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 C11orf96Q7Z7L8 435 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 TRAPPC5Q8IUR0 188 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 SYT12Q8IV01 421 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 DCLK2Q8N568 766 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 MZB1Q8WU39 189 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 ELMO2Q96JJ3 720 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 PRRX2Q99811 253 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 ROPN1BQ9BZX4 212 aaPredicted RBP16.35■□□□□ 0.21
VPS4A-202ENST00000562754 ROPN1Q9HAT0 212 aaPredicted RBP16.35■□□□□ 0.21
VPS4A-202ENST00000562754 GALPQ9UBC7 116 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 KLQ9UEF7 1012 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 SUSD2Q9UGT4 822 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 TBK1Q9UHD2 729 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 SUFUQ9UMX1 484 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 TMEM131Q92545 1883 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 MUC6Q6W4X9 2439 aa16.35■□□□□ 0.21
VPS4A-202ENST00000562754 A0A1B0GVT2 93 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 TLDC2A0PJX2 215 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 GPR89AB7ZAQ6 455 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 TRIM49D1C9J1S8 452 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 MAP2K7O14733 419 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 TNFRSF10CO14798 259 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 SCAMP1O15126 338 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 CDH16O75309 829 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 EPN2O95208 641 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 GPR89BP0CG08 455 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 ITGB6P18564 788 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 FDXRP22570 491 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 TAS2R39P59534 338 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 PTK2BQ14289 1009 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 PLA2G4EQ3MJ16 856 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 KRT71Q3SY84 523 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 PYCR3Q53H96 274 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 CEP85LQ5SZL2 805 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 MROH9Q5TGP6 573 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 FAM45BPQ6NSW5 357 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 PIM3Q86V86 326 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 LRRTM4Q86VH4 590 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 DCP2Q8IU60 420 aaKnown RBP16.34■□□□□ 0.21
VPS4A-202ENST00000562754 CYP4X1Q8N118 509 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 GIMAP7Q8NHV1 300 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 FAM45AQ8TCE6 357 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 TSACCQ96A04 125 aaPredicted RBP16.34■□□□□ 0.21
VPS4A-202ENST00000562754 FAM136AQ96C01 138 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 CCDC68Q9H2F9 335 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 VIPAS39Q9H9C1 493 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 CAB39LQ9H9S4 337 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 CYP4F12Q9HCS2 524 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 TM7SF3Q9NS93 570 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 LGALS13Q9UHV8 139 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 MOSPD1Q9UJG1 213 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 SLC39A10Q9ULF5 831 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 SMG5Q9UPR3 1016 aaKnown RBP16.34■□□□□ 0.21
VPS4A-202ENST00000562754 COMMD10Q9Y6G5 202 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 PCDH15Q96QU1 1955 aa16.34■□□□□ 0.21
VPS4A-202ENST00000562754 ZFC3H1O60293 1989 aaKnown RBP16.33■□□□□ 0.21
VPS4A-202ENST00000562754 FOXO6A8MYZ6 492 aa16.33■□□□□ 0.2
VPS4A-202ENST00000562754 PRR5-ARHGAP8B1AHC4 643 aa16.33■□□□□ 0.2
VPS4A-202ENST00000562754 H3BMM5 538 aa16.33■□□□□ 0.2
VPS4A-202ENST00000562754 AGPSO00116 658 aa16.33■□□□□ 0.2
VPS4A-202ENST00000562754 GRID2O43424 1007 aa16.33■□□□□ 0.2
VPS4A-202ENST00000562754 KRT38O76015 456 aa16.33■□□□□ 0.2
VPS4A-202ENST00000562754 OR56A5P0C7T3 313 aa16.33■□□□□ 0.2
VPS4A-202ENST00000562754 GNSP15586 552 aa16.33■□□□□ 0.2
VPS4A-202ENST00000562754 PBLDP30039 288 aaPredicted RBP16.33■□□□□ 0.2
VPS4A-202ENST00000562754 HOXD12P35452 270 aa16.33■□□□□ 0.2
VPS4A-202ENST00000562754 GNPDA1P46926 289 aa16.33■□□□□ 0.2
VPS4A-202ENST00000562754 SRP54P61011 504 aaKnown RBP16.33■□□□□ 0.2
VPS4A-202ENST00000562754 TEAD4Q15561 434 aa16.33■□□□□ 0.2
VPS4A-202ENST00000562754 ZNF658BQ4V348 819 aaPredicted RBP16.33■□□□□ 0.2
VPS4A-202ENST00000562754 XKR5Q6UX68 686 aa16.33■□□□□ 0.2
VPS4A-202ENST00000562754 TAOK1Q7L7X3 1001 aa16.33■□□□□ 0.2
VPS4A-202ENST00000562754 CMC1Q7Z7K0 106 aa16.33■□□□□ 0.2
VPS4A-202ENST00000562754 PARGQ86W56 976 aa16.33■□□□□ 0.2
VPS4A-202ENST00000562754 CEP97Q8IW35 865 aa16.33■□□□□ 0.2
VPS4A-202ENST00000562754 RIBC1Q8N443 379 aaPredicted RBP16.33■□□□□ 0.2
VPS4A-202ENST00000562754 OXR1Q8N573 874 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms