RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 IGDCC3Q8IVU1 814 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 RIBC1Q8N443 379 aaPredicted RBP11.69□□□□□ -0.54
LDLR-212ENST00000560467 PPM1NQ8N819 430 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 ZNF548Q8NEK5 533 aaPredicted RBP11.69□□□□□ -0.54
LDLR-212ENST00000560467 OR4K2Q8NGD2 314 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 IFI44Q8TCB0 444 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 MAPK15Q8TD08 544 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 MFSD3Q96ES6 412 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 CERS2Q96G23 380 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 ZIM3Q96PE6 472 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 TMEM109Q9BVC6 243 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 HDAC8Q9BY41 377 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 NLE1Q9NVX2 485 aaPredicted RBP11.69□□□□□ -0.54
LDLR-212ENST00000560467 KCTD5Q9NXV2 234 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 VPS18Q9P253 973 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 RABGEF1Q9UJ41 708 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 PPIL1Q9Y3C6 166 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 SLC30A1Q9Y6M5 507 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 NYNRINQ9P2P1 1898 aaKnown RBP11.68□□□□□ -0.54
LDLR-212ENST00000560467 TSPAN11A1L157 253 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 SMIM23A6NLE4 172 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 A6NNZ2 444 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 GOLGA8KD6RF30 607 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 F8W8V4 182 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 SCAMP1O15126 338 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 RAD51BO15315 384 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 GP1BAP07359 652 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 ALPIP09923 528 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 TIMP2P16035 220 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 NMBRP28336 390 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 GPX6P59796 221 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 ERVPABLB-1P60509 514 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 TMPRSS15P98073 1019 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 FZD2Q14332 565 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 CDKN3Q16667 212 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 ISXQ2M1V0 245 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 KBTBD12Q3ZCT8 623 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 FASTKD1Q53R41 847 aaKnown RBP11.68□□□□□ -0.54
LDLR-212ENST00000560467 HSP90AA5PQ58FG0 334 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 C3orf38Q5JPI3 329 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 TPRG1LQ5T0D9 272 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 LYPLAL1Q5VWZ2 237 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 ESRP1Q6NXG1 681 aaKnown RBP11.68□□□□□ -0.54
LDLR-212ENST00000560467 NEK5Q6P3R8 708 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 GUSBP11Q6P575 273 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 AFTPHQ6ULP2 937 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 CRTC1Q6UUV9 634 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 RAVER1Q8IY67 606 aaKnown RBP11.68□□□□□ -0.54
LDLR-212ENST00000560467 LSMEM2Q8N112 164 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 FAM181AQ8N9Y4 354 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 OR4L1Q8NH43 312 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 CXorf40AQ8TE69 158 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 SCG3Q8WXD2 468 aaKnown RBP11.68□□□□□ -0.54
LDLR-212ENST00000560467 TTC9Q92623 222 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 HDAC10Q969S8 669 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 MRRFQ96E11 262 aaKnown RBP11.68□□□□□ -0.54
LDLR-212ENST00000560467 ATXN7L3BQ96GX2 97 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 LYSMD1Q96S90 227 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 ABCG4Q9H172 646 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 PCDH12Q9NPG4 1184 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 THSD1Q9NS62 852 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 GPR27Q9NS67 375 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 MOCS1Q9NZB8 636 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 PSMC3IPQ9P2W1 217 aaPredicted RBP11.68□□□□□ -0.54
LDLR-212ENST00000560467 SATB2Q9UPW6 733 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 ARL5AQ9Y689 179 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 NAV2Q8IVL1 2488 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 MYLKQ15746 1914 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 MYO18BQ8IUG5 2567 aa11.68□□□□□ -0.54
LDLR-212ENST00000560467 CCDC78A2IDD5 438 aa11.67□□□□□ -0.54
LDLR-212ENST00000560467 CPED1A4D0V7 1026 aa11.67□□□□□ -0.54
LDLR-212ENST00000560467 POM121BA6NF01 834 aa11.67□□□□□ -0.54
LDLR-212ENST00000560467 CASC3O15234 703 aaKnown RBP11.67□□□□□ -0.54
LDLR-212ENST00000560467 TSPAN6O43657 245 aa11.67□□□□□ -0.54
LDLR-212ENST00000560467 LDB2O43679 373 aa11.67□□□□□ -0.54
LDLR-212ENST00000560467 LZTS3O60299 673 aaPredicted RBP11.67□□□□□ -0.54
LDLR-212ENST00000560467 ELFN1P0C7U0 828 aa11.67□□□□□ -0.54
LDLR-212ENST00000560467 ERVK-10P10266 1014 aa11.67□□□□□ -0.54
LDLR-212ENST00000560467 KRT15P19012 456 aa11.67□□□□□ -0.54
LDLR-212ENST00000560467 ITGALP20701 1170 aa11.67□□□□□ -0.54
LDLR-212ENST00000560467 SPRP35270 261 aaPredicted RBP11.67□□□□□ -0.54
LDLR-212ENST00000560467 DUSP3P51452 185 aaPredicted RBP11.67□□□□□ -0.54
LDLR-212ENST00000560467 IHHQ14623 411 aa11.67□□□□□ -0.54
LDLR-212ENST00000560467 RNF187Q5TA31 235 aaPredicted RBP11.67□□□□□ -0.54
LDLR-212ENST00000560467 GRTP1Q5TC63 336 aa11.67□□□□□ -0.54
LDLR-212ENST00000560467 KYAT3Q6YP21 454 aaKnown RBP11.67□□□□□ -0.54
LDLR-212ENST00000560467 CERS6Q6ZMG9 384 aa11.67□□□□□ -0.54
LDLR-212ENST00000560467 KIAA0408Q6ZU52 694 aa11.67□□□□□ -0.54
LDLR-212ENST00000560467 TAS2R42Q7RTR8 314 aa11.67□□□□□ -0.54
LDLR-212ENST00000560467 EFL1Q7Z2Z2 1120 aaKnown RBP11.67□□□□□ -0.54
LDLR-212ENST00000560467 LYSMD3Q7Z3D4 306 aa11.67□□□□□ -0.54
LDLR-212ENST00000560467 CBARPQ8N350 705 aaPredicted RBP11.67□□□□□ -0.54
LDLR-212ENST00000560467 MTBPQ96DY7 904 aa11.67□□□□□ -0.54
LDLR-212ENST00000560467 WBP1Q96G27 269 aa11.67□□□□□ -0.54
LDLR-212ENST00000560467 BMFQ96LC9 184 aa11.67□□□□□ -0.54
LDLR-212ENST00000560467 MCCC1Q96RQ3 725 aaPredicted RBP11.67□□□□□ -0.54
LDLR-212ENST00000560467 TCF12Q99081 682 aa11.67□□□□□ -0.54
LDLR-212ENST00000560467 CPNE1Q99829 537 aa11.67□□□□□ -0.54
LDLR-212ENST00000560467 CCDC68Q9H2F9 335 aa11.67□□□□□ -0.54
LDLR-212ENST00000560467 IARS2Q9NSE4 1012 aaKnown RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms