RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 ABCG8Q9H221 673 aa12.33□□□□□ -0.44
SHMT2-214ENST00000554604 DPEP2Q9H4A9 486 aa12.33□□□□□ -0.44
SHMT2-214ENST00000554604 PPANQ9NQ55 473 aaKnown RBP12.33□□□□□ -0.44
SHMT2-214ENST00000554604 EIF2B3Q9NR50 452 aaKnown RBP12.33□□□□□ -0.44
SHMT2-214ENST00000554604 PSMC3IPQ9P2W1 217 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-214ENST00000554604 PTPRQQ9UMZ3 2332 aa12.33□□□□□ -0.44
SHMT2-214ENST00000554604 CACNA1GO43497 2377 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 B4DGG1 531 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 ANKRD66B4E2M5 251 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 POC1B-GALNT4F8VUJ3 575 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 MTSS1O43312 755 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 BRINP1O60477 761 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 BANF1O75531 89 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 CLDN7O95471 211 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 METTL18O95568 372 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 PRLP01236 227 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 MLNP12872 115 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 BRAFP15056 766 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 TEAD1P28347 426 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 SSTR1P30872 391 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 MAGEA3P43357 314 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 GNPDA1P46926 289 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 STC1P52823 247 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 SEC24CP53992 1094 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 SLC18A1P54219 525 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 PTSQ03393 145 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 ILF3Q12906 894 aaKnown RBP eCLIP12.32□□□□□ -0.44
SHMT2-214ENST00000554604 SPIDRQ14159 915 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 TMED2Q15363 201 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 ISXQ2M1V0 245 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 ANKRD20A2Q5SQ80 823 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 HP1BP3Q5SSJ5 553 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-214ENST00000554604 ANKRD20A1Q5TYW2 823 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 ANKRD20A3Q5VUR7 823 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 DOK6Q6PKX4 331 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 C19orf48Q6RUI8 117 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 RFLNAQ6ZTI6 216 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 C3orf62Q6ZUJ4 267 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 ZNF765Q7L2R6 523 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 KDELC2Q7Z4H8 507 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 NRSN1Q8IZ57 195 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 TAB3Q8N5C8 712 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-214ENST00000554604 SCAMP4Q969E2 229 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 CCDC74AQ96AQ1 378 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 MLPHQ9BV36 600 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-214ENST00000554604 GSDMCQ9BYG8 508 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 XAB2Q9HCS7 855 aaKnown RBP12.32□□□□□ -0.44
SHMT2-214ENST00000554604 LHX6Q9UPM6 363 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 CHMP2BQ9UQN3 213 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 GPSM3Q9Y4H4 160 aa12.32□□□□□ -0.44
SHMT2-214ENST00000554604 COL27A1Q8IZC6 1860 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-214ENST00000554604 TMEM120BA0PK00 339 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 EBAG9O00559 213 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 MPOP05164 745 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 CEACAM5P06731 702 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 APRTP07741 180 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 MMP2P08253 660 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 CCT5P48643 541 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 POLD2P49005 469 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 GABREP78334 506 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 SARNPP82979 210 aaKnown RBP12.31□□□□□ -0.44
SHMT2-214ENST00000554604 GALNT3Q14435 633 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 PCSK7Q16549 785 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 QPCTQ16769 361 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 PARP6Q2NL67 630 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 FOXR1Q6PIV2 292 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 ADGRD1Q6QNK2 874 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 ADAMTSL4Q6UY14 1074 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 LRRC69Q6ZNQ3 347 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 ZNF534Q76KX8 674 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 CAND1Q86VP6 1230 aaKnown RBP12.31□□□□□ -0.44
SHMT2-214ENST00000554604 CCL4L1Q8NHW4 92 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 FBF1Q8TES7 1133 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 FGF11Q92914 225 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 GRAMD1AQ96CP6 724 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 CHMP6Q96FZ7 201 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 IMP4Q96G21 291 aaKnown RBP12.31□□□□□ -0.44
SHMT2-214ENST00000554604 HIC2Q96JB3 615 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 GFM1Q96RP9 751 aaKnown RBP12.31□□□□□ -0.44
SHMT2-214ENST00000554604 CYTH2Q99418 400 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 RIOK2Q9BVS4 552 aaKnown RBP12.31□□□□□ -0.44
SHMT2-214ENST00000554604 CDH19Q9H159 772 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 SLC25A51Q9H1U9 297 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 POLR1BQ9H9Y6 1135 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 SSU72Q9NP77 194 aaKnown RBP12.31□□□□□ -0.44
SHMT2-214ENST00000554604 TRNAU1APQ9NX07 287 aaKnown RBP12.31□□□□□ -0.44
SHMT2-214ENST00000554604 PKD2L2Q9NZM6 624 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 TBK1Q9UHD2 729 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 PRDM4Q9UKN5 801 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 SUFUQ9UMX1 484 aa12.31□□□□□ -0.44
SHMT2-214ENST00000554604 INPP4BO15327 924 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 RRP8O43159 456 aaKnown RBP12.3□□□□□ -0.44
SHMT2-214ENST00000554604 PRPF4O43172 522 aaKnown RBP eCLIP12.3□□□□□ -0.443e-10■■□□□ 12.6
SHMT2-214ENST00000554604 ASMTLO95671 621 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 GLB1P16278 677 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 STX2P32856 288 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 LSSP48449 732 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 WASHC5Q12768 1159 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 BIRC2Q13490 618 aa12.3□□□□□ -0.44
SHMT2-214ENST00000554604 PEX6Q13608 980 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms