RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 SPRP35270 261 aaPredicted RBP9.22□□□□□ -0.93
DDX55-208ENST00000541259 NUDT1P36639 197 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 CTSCP53634 463 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 CSE1LP55060 971 aaKnown RBP9.22□□□□□ -0.93
DDX55-208ENST00000541259 TIAL1Q01085 375 aaKnown RBP eCLIP9.22□□□□□ -0.93
DDX55-208ENST00000541259 ITIH4Q14624 930 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 CEP85LQ5SZL2 805 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 MROH9Q5TGP6 573 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 TMEM220Q6QAJ8 160 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 LRIG3Q6UXM1 1119 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 CEP68Q76N32 757 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 GALNT7Q86SF2 657 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 PHYKPLQ8IUZ5 450 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 RBFAQ8N0V3 343 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 KRT222Q8N1A0 295 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 SLC22A18ASQ8N1D0 253 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 BEND7Q8N7W2 519 aaPredicted RBP9.22□□□□□ -0.93
DDX55-208ENST00000541259 GABPB2Q8TAK5 448 aaPredicted RBP9.22□□□□□ -0.93
DDX55-208ENST00000541259 LKAAEAR1Q8TD35 194 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 VPS39Q96JC1 886 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 TTC1Q99614 292 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 TMEM109Q9BVC6 243 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 C1QTNF1Q9BXJ1 281 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 ROPN1BQ9BZX4 212 aaPredicted RBP9.22□□□□□ -0.93
DDX55-208ENST00000541259 RHOJQ9H4E5 214 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 ROPN1Q9HAT0 212 aaPredicted RBP9.22□□□□□ -0.93
DDX55-208ENST00000541259 TRIM39Q9HCM9 518 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 TM9SF3Q9HD45 589 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 MRPL40Q9NQ50 206 aaKnown RBP9.22□□□□□ -0.93
DDX55-208ENST00000541259 PHPT1Q9NRX4 125 aaPredicted RBP9.22□□□□□ -0.93
DDX55-208ENST00000541259 TMEM74BQ9NUR3 256 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 NSMCE4AQ9NXX6 385 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 EURLQ9NYK6 297 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 TXNDC16Q9P2K2 825 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 FETUBQ9UGM5 382 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 PNMA8BQ9ULN7 279 aaPredicted RBP9.22□□□□□ -0.93
DDX55-208ENST00000541259 MED16Q9Y2X0 877 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 PRKAB1Q9Y478 270 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 R4GN57 208 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 VPS13AQ96RL7 3174 aa9.22□□□□□ -0.93
DDX55-208ENST00000541259 FAM95CA0A1B0GW59 222 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 A6NNZ2 444 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 CACNB4O00305 520 aaPredicted RBP9.21□□□□□ -0.94
DDX55-208ENST00000541259 PRMT5O14744 637 aaPredicted RBP9.21□□□□□ -0.94
DDX55-208ENST00000541259 SCAMP1O15126 338 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 PFDN6O15212 129 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 NIPSNAP2O75323 286 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 CDK14O94921 469 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 IVLP07476 585 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 HOXC4P09017 264 aaPredicted RBP9.21□□□□□ -0.94
DDX55-208ENST00000541259 THEGLP0DJG4 465 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 PKMP14618 531 aaKnown RBP9.21□□□□□ -0.94
DDX55-208ENST00000541259 SAT1P21673 171 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 RPS3P23396 243 aaKnown RBP eCLIP9.21□□□□□ -0.94
DDX55-208ENST00000541259 CD38P28907 300 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 CNR2P34972 360 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 GMPRP36959 345 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 PPARGP37231 505 aaPredicted RBP9.21□□□□□ -0.94
DDX55-208ENST00000541259 NSG1P42857 185 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 CSNK1EP49674 416 aaKnown RBP9.21□□□□□ -0.94
DDX55-208ENST00000541259 LIMK2P53671 638 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 CDKN2DP55273 166 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 KIAA1024LP59773 190 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 YPEL5P62699 121 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 RACK1P63244 317 aaKnown RBP9.21□□□□□ -0.94
DDX55-208ENST00000541259 SIM2Q14190 667 aaPredicted RBP9.21□□□□□ -0.94
DDX55-208ENST00000541259 NFATC4Q14934 902 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 TMED2Q15363 201 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 LPAL2Q16609 132 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 KRT71Q3SY84 523 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 WDR45BQ5MNZ6 344 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 RNF187Q5TA31 235 aaPredicted RBP9.21□□□□□ -0.94
DDX55-208ENST00000541259 HECTD2Q5U5R9 776 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 LYSMD4Q5XG99 296 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 ENPP7Q6UWV6 458 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 NAPRTQ6XQN6 538 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 KYAT3Q6YP21 454 aaKnown RBP9.21□□□□□ -0.94
DDX55-208ENST00000541259 PRR23BQ6ZRT6 265 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 C11orf74Q86VG3 221 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 TDRPQ86YL5 185 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 ZNF547Q8IVP9 402 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 CEP97Q8IW35 865 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 DCLK2Q8N568 766 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 GPATCH11Q8N954 259 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 MZB1Q8WU39 189 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 SCG3Q8WXD2 468 aaKnown RBP9.21□□□□□ -0.94
DDX55-208ENST00000541259 TSACCQ96A04 125 aaPredicted RBP9.21□□□□□ -0.94
DDX55-208ENST00000541259 FAM136AQ96C01 138 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 KLHDC7BQ96G42 594 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 DCUN1D1Q96GG9 259 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 ELMO2Q96JJ3 720 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 ZC3H10Q96K80 434 aaKnown RBP9.21□□□□□ -0.94
DDX55-208ENST00000541259 GPR22Q99680 433 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 SLC30A3Q99726 388 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 OLFM1Q99784 485 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 AARSD1Q9BTE6 412 aaKnown RBP9.21□□□□□ -0.94
DDX55-208ENST00000541259 CLPBQ9H078 707 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 CAB39LQ9H9S4 337 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 GPR27Q9NS67 375 aa9.21□□□□□ -0.94
DDX55-208ENST00000541259 PSMC3IPQ9P2W1 217 aaPredicted RBP9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms