RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 SDF4Q9BRK5 362 aa4.46□□□□□ -1.7
CD44-223ENST00000526553 RAB6CQ9H0N0 254 aa4.46□□□□□ -1.7
CD44-223ENST00000526553 SH2D4AQ9H788 454 aa4.46□□□□□ -1.7
CD44-223ENST00000526553 FAM118AQ9NWS6 357 aa4.46□□□□□ -1.7
CD44-223ENST00000526553 MDFICQ9P1T7 246 aa4.46□□□□□ -1.7
CD44-223ENST00000526553 CORO1CQ9ULV4 474 aaPredicted RBP4.46□□□□□ -1.7
CD44-223ENST00000526553 TCF19Q9Y242 345 aa4.46□□□□□ -1.7
CD44-223ENST00000526553 LYVE1Q9Y5Y7 322 aa4.46□□□□□ -1.7
CD44-223ENST00000526553 ABCC9O60706 1549 aa4.46□□□□□ -1.7
CD44-223ENST00000526553 IGLV5-45A0A087WSX0 123 aa4.45□□□□□ -1.7
CD44-223ENST00000526553 TMEM178BH3BS89 294 aa4.45□□□□□ -1.7
CD44-223ENST00000526553 OGG1O15527 345 aa4.45□□□□□ -1.7
CD44-223ENST00000526553 ZNF500O60304 480 aaPredicted RBP4.45□□□□□ -1.7
CD44-223ENST00000526553 PDE9AO76083 593 aa4.45□□□□□ -1.7
CD44-223ENST00000526553 CSF2RAP15509 400 aa4.45□□□□□ -1.7
CD44-223ENST00000526553 PAX1P15863 534 aa4.45□□□□□ -1.7
CD44-223ENST00000526553 ANXA7P20073 488 aaKnown RBP4.45□□□□□ -1.7
CD44-223ENST00000526553 HOXA13P31271 388 aaPredicted RBP4.45□□□□□ -1.7
CD44-223ENST00000526553 PPARGP37231 505 aaPredicted RBP4.45□□□□□ -1.7
CD44-223ENST00000526553 GLIPR1P48060 266 aa4.45□□□□□ -1.7
CD44-223ENST00000526553 GPR143P51810 404 aa4.45□□□□□ -1.7
CD44-223ENST00000526553 CTSCP53634 463 aa4.45□□□□□ -1.7
CD44-223ENST00000526553 MLLT10P55197 1068 aa4.45□□□□□ -1.7
CD44-223ENST00000526553 KRTAP10-6P60371 365 aaPredicted RBP4.45□□□□□ -1.7
CD44-223ENST00000526553 RBM39Q14498 530 aaKnown RBP4.45□□□□□ -1.7
CD44-223ENST00000526553 MVPQ14764 893 aaKnown RBP4.45□□□□□ -1.7
CD44-223ENST00000526553 ASTE1Q2TB18 679 aaPredicted RBP4.45□□□□□ -1.7
CD44-223ENST00000526553 CFAP77Q6ZQR2 320 aa4.45□□□□□ -1.7
CD44-223ENST00000526553 CCDC190Q86UF4 302 aa4.45□□□□□ -1.7
CD44-223ENST00000526553 RASGEF1CQ8N431 466 aa4.45□□□□□ -1.7
CD44-223ENST00000526553 PPP4R1Q8TF05 950 aa4.45□□□□□ -1.7
CD44-223ENST00000526553 ALG14Q96F25 216 aa4.45□□□□□ -1.7
CD44-223ENST00000526553 ABHD8Q96I13 439 aa4.45□□□□□ -1.7
CD44-223ENST00000526553 SEMA3CQ99985 751 aa4.45□□□□□ -1.7
CD44-223ENST00000526553 SYNCQ9H7C4 482 aa4.45□□□□□ -1.7
CD44-223ENST00000526553 KAT14Q9H8E8 782 aa4.45□□□□□ -1.7
CD44-223ENST00000526553 SETD4Q9NVD3 440 aa4.45□□□□□ -1.7
CD44-223ENST00000526553 KLHL9Q9P2J3 617 aa4.45□□□□□ -1.7
CD44-223ENST00000526553 SESN1Q9Y6P5 492 aa4.45□□□□□ -1.7
CD44-223ENST00000526553 FRMD3A2A2Y4 597 aa4.44□□□□□ -1.7
CD44-223ENST00000526553 MYO1GB0I1T2 1018 aa4.44□□□□□ -1.7
CD44-223ENST00000526553 H3BQ06 376 aaPredicted RBP4.44□□□□□ -1.7
CD44-223ENST00000526553 TM4SF1P30408 202 aa4.44□□□□□ -1.7
CD44-223ENST00000526553 CDKN1AP38936 164 aa4.44□□□□□ -1.7
CD44-223ENST00000526553 RAD52P43351 418 aa4.44□□□□□ -1.7
CD44-223ENST00000526553 ACVR2BQ13705 512 aa4.44□□□□□ -1.7
CD44-223ENST00000526553 CRYMQ14894 314 aa4.44□□□□□ -1.7
CD44-223ENST00000526553 ZSCAN23Q3MJ62 389 aa4.44□□□□□ -1.7
CD44-223ENST00000526553 RARS2Q5T160 578 aaKnown RBP4.44□□□□□ -1.7
CD44-223ENST00000526553 OTUD3Q5T2D3 398 aaPredicted RBP4.44□□□□□ -1.7
CD44-223ENST00000526553 IKBIPQ70UQ0 350 aa4.44□□□□□ -1.7
CD44-223ENST00000526553 OR8H2Q8N162 312 aa4.44□□□□□ -1.7
CD44-223ENST00000526553 SLC5A8Q8N695 610 aa4.44□□□□□ -1.7
CD44-223ENST00000526553 HJURPQ8NCD3 748 aaPredicted RBP4.44□□□□□ -1.7
CD44-223ENST00000526553 KLHDC9Q8NEP7 349 aa4.44□□□□□ -1.7
CD44-223ENST00000526553 SCFD2Q8WU76 684 aa4.44□□□□□ -1.7
CD44-223ENST00000526553 USP6NLQ92738 828 aa4.44□□□□□ -1.7
CD44-223ENST00000526553 ELMOD3Q96FG2 381 aa4.44□□□□□ -1.7
CD44-223ENST00000526553 PGAM5Q96HS1 289 aa4.44□□□□□ -1.7
CD44-223ENST00000526553 CMTM3Q96MX0 182 aa4.44□□□□□ -1.7
CD44-223ENST00000526553 OR2A14Q96R47 310 aa4.44□□□□□ -1.7
CD44-223ENST00000526553 SMC6Q96SB8 1091 aa4.44□□□□□ -1.7
CD44-223ENST00000526553 EIF2B3Q9NR50 452 aaKnown RBP4.44□□□□□ -1.7
CD44-223ENST00000526553 TRMT1Q9NXH9 659 aaKnown RBP4.44□□□□□ -1.7
CD44-223ENST00000526553 VPS28Q9UK41 221 aa4.44□□□□□ -1.7
CD44-223ENST00000526553 FAF1Q9UNN5 650 aaPredicted RBP4.44□□□□□ -1.7
CD44-223ENST00000526553 ERVV-2B6SEH9 535 aa4.43□□□□□ -1.7
CD44-223ENST00000526553 HS6ST1O60243 411 aa4.43□□□□□ -1.7
CD44-223ENST00000526553 PRKNO60260 465 aaPredicted RBP4.43□□□□□ -1.7
CD44-223ENST00000526553 DOK2O60496 412 aa4.43□□□□□ -1.7
CD44-223ENST00000526553 PTP4A3O75365 173 aa4.43□□□□□ -1.7
CD44-223ENST00000526553 GPC4O75487 556 aa4.43□□□□□ -1.7
CD44-223ENST00000526553 OR2C1O95371 312 aa4.43□□□□□ -1.7
CD44-223ENST00000526553 SRPRAP08240 638 aaKnown RBP4.43□□□□□ -1.7
CD44-223ENST00000526553 RARGP13631 454 aa4.43□□□□□ -1.7
CD44-223ENST00000526553 MCCP23508 829 aa4.43□□□□□ -1.7
CD44-223ENST00000526553 NR2F2P24468 414 aa4.43□□□□□ -1.7
CD44-223ENST00000526553 HOXD13P35453 343 aa4.43□□□□□ -1.7
CD44-223ENST00000526553 MSH2P43246 934 aa4.43□□□□□ -1.7
CD44-223ENST00000526553 CUL4AQ13619 759 aa4.43□□□□□ -1.7
CD44-223ENST00000526553 PLA2G4FQ68DD2 849 aa4.43□□□□□ -1.7
CD44-223ENST00000526553 TPRG1Q6ZUI0 275 aa4.43□□□□□ -1.7
CD44-223ENST00000526553 EPHX4Q8IUS5 362 aa4.43□□□□□ -1.7
CD44-223ENST00000526553 C1orf131Q8NDD1 294 aaKnown RBP4.43□□□□□ -1.7
CD44-223ENST00000526553 RDM1Q8NG50 284 aa4.43□□□□□ -1.7
CD44-223ENST00000526553 MOAP1Q96BY2 351 aa4.43□□□□□ -1.7
CD44-223ENST00000526553 NSUN4Q96CB9 384 aaKnown RBP4.43□□□□□ -1.7
CD44-223ENST00000526553 ST6GAL2Q96JF0 529 aa4.43□□□□□ -1.7
CD44-223ENST00000526553 NUDCD1Q96RS6 583 aa4.43□□□□□ -1.7
CD44-223ENST00000526553 C1QTNF1Q9BXJ1 281 aa4.43□□□□□ -1.7
CD44-223ENST00000526553 GHITMQ9H3K2 345 aa4.43□□□□□ -1.7
CD44-223ENST00000526553 HAUS2Q9NVX0 235 aa4.43□□□□□ -1.7
CD44-223ENST00000526553 NKIRAS2Q9NYR9 191 aa4.43□□□□□ -1.7
CD44-223ENST00000526553 RCC2Q9P258 522 aaKnown RBP4.43□□□□□ -1.7
CD44-223ENST00000526553 BCCIPQ9P287 314 aaKnown RBP eCLIP4.43□□□□□ -1.7
CD44-223ENST00000526553 PRAG1Q86YV5 1406 aa4.43□□□□□ -1.7
CD44-223ENST00000526553 KAT6BQ8WYB5 2073 aa4.42□□□□□ -1.7
CD44-223ENST00000526553 RUSC2Q8N2Y8 1516 aa4.42□□□□□ -1.7
CD44-223ENST00000526553 A0A0G2JNG1 304 aa4.42□□□□□ -1.7
CD44-223ENST00000526553 TMEM8BA6NDV4 472 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms