RNA–Protein interactions for RNA: ENST00000524258.2

CLN8-207, Transcript of CLN8, transmembrane ER and ERGIC protein, humanhuman

TSL 2

Gene CLN8, Length 835 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN8-207ENST00000524258 DNMT3AQ9Y6K1 912 aaPredicted RBP11.77□□□□□ -0.53
CLN8-207ENST00000524258 A0A1W2PNU3 283 aaPredicted RBP11.76□□□□□ -0.53
CLN8-207ENST00000524258 OR2AG2A6NM03 316 aa11.76□□□□□ -0.53
CLN8-207ENST00000524258 DNALI1O14645 258 aaPredicted RBP11.76□□□□□ -0.53
CLN8-207ENST00000524258 MT-CO3P00414 261 aa11.76□□□□□ -0.53
CLN8-207ENST00000524258 GOT2P00505 430 aaKnown RBP11.76□□□□□ -0.53
CLN8-207ENST00000524258 ITGALP20701 1170 aa11.76□□□□□ -0.53
CLN8-207ENST00000524258 ARCN1P48444 511 aaKnown RBP11.76□□□□□ -0.53
CLN8-207ENST00000524258 UBE2IP63279 158 aaKnown RBP11.76□□□□□ -0.53
CLN8-207ENST00000524258 CCL7P80098 99 aa11.76□□□□□ -0.53
CLN8-207ENST00000524258 CFHR1Q03591 330 aa11.76□□□□□ -0.53
CLN8-207ENST00000524258 CACNG1Q06432 222 aa11.76□□□□□ -0.53
CLN8-207ENST00000524258 LAMB3Q13751 1172 aa11.76□□□□□ -0.53
CLN8-207ENST00000524258 AGAP9Q5VTM2 703 aa11.76□□□□□ -0.53
CLN8-207ENST00000524258 ARMC3Q5W041 872 aa11.76□□□□□ -0.53
CLN8-207ENST00000524258 NLRP9Q7RTR0 991 aa11.76□□□□□ -0.53
CLN8-207ENST00000524258 TMPRSS9Q7Z410 1059 aa11.76□□□□□ -0.53
CLN8-207ENST00000524258 SPRED1Q7Z699 444 aa11.76□□□□□ -0.53
CLN8-207ENST00000524258 JAMLQ86YT9 394 aa11.76□□□□□ -0.53
CLN8-207ENST00000524258 GALNT15Q8N3T1 639 aa11.76□□□□□ -0.53
CLN8-207ENST00000524258 BEND7Q8N7W2 519 aaPredicted RBP11.76□□□□□ -0.53
CLN8-207ENST00000524258 OR6C4Q8NGE1 309 aa11.76□□□□□ -0.53
CLN8-207ENST00000524258 GDAP1Q8TB36 358 aa11.76□□□□□ -0.53
CLN8-207ENST00000524258 ULK4Q96C45 1275 aa11.76□□□□□ -0.53
CLN8-207ENST00000524258 SERPINB12Q96P63 405 aa11.76□□□□□ -0.53
CLN8-207ENST00000524258 TRIM56Q9BRZ2 755 aaKnown RBP11.76□□□□□ -0.53
CLN8-207ENST00000524258 BFARQ9NZS9 450 aa11.76□□□□□ -0.53
CLN8-207ENST00000524258 MARCH4Q9P2E8 410 aaPredicted RBP11.76□□□□□ -0.53
CLN8-207ENST00000524258 ZNF624Q9P2J8 865 aaPredicted RBP11.76□□□□□ -0.53
CLN8-207ENST00000524258 LRIT1Q9P2V4 623 aa11.76□□□□□ -0.53
CLN8-207ENST00000524258 SOX13Q9UN79 622 aa11.76□□□□□ -0.53
CLN8-207ENST00000524258 WDR37Q9Y2I8 494 aa11.76□□□□□ -0.53
CLN8-207ENST00000524258 PRSS21Q9Y6M0 314 aa11.76□□□□□ -0.53
CLN8-207ENST00000524258 SLC30A1Q9Y6M5 507 aa11.76□□□□□ -0.53
CLN8-207ENST00000524258 APC2O95996 2303 aa11.76□□□□□ -0.53
CLN8-207ENST00000524258 ZFC3H1O60293 1989 aaKnown RBP11.76□□□□□ -0.53
CLN8-207ENST00000524258 MAP1BP46821 2468 aaKnown RBP11.76□□□□□ -0.53
CLN8-207ENST00000524258 WDFY3Q8IZQ1 3526 aa11.76□□□□□ -0.53
CLN8-207ENST00000524258 USP24Q9UPU5 2620 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 TRBV23OR9-2A0A075B6M9 112 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 CCDC188H7C350 402 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 AP3B1O00203 1094 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 KCNJ13O60928 360 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 GAS8O95995 478 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 F3P13726 295 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 ATP1B2P14415 290 aaPredicted RBP11.75□□□□□ -0.53
CLN8-207ENST00000524258 XRCC1P18887 633 aaPredicted RBP11.75□□□□□ -0.53
CLN8-207ENST00000524258 CASQ1P31415 396 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 SLC19A1P41440 591 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 PRLHRP49683 370 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 TERF1P54274 439 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 TARDBPQ13148 414 aaKnown RBP eCLIP11.75□□□□□ -0.53
CLN8-207ENST00000524258 CBLBQ13191 982 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 SQSTM1Q13501 440 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 CLCA4Q14CN2 919 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 PLA2G4EQ3MJ16 856 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 ZRANB3Q5FWF4 1079 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 METRNLQ641Q3 311 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 CES3Q6UWW8 571 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 PACS1Q6VY07 963 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 TMEM135Q86UB9 458 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 TRAPPC5Q8IUR0 188 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 KLHL7Q8IXQ5 586 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 PPIL6Q8IXY8 311 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 LILRA3Q8N6C8 439 aaPredicted RBP11.75□□□□□ -0.53
CLN8-207ENST00000524258 CLDN19Q8N6F1 224 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 SPATA4Q8NEY3 305 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 MAPK15Q8TD08 544 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 MFSD3Q96ES6 412 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 ZNF514Q96K75 400 aaPredicted RBP11.75□□□□□ -0.53
CLN8-207ENST00000524258 FCRL3Q96P31 734 aaPredicted RBP11.75□□□□□ -0.53
CLN8-207ENST00000524258 COPS8Q99627 209 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 PLAC1Q9HBJ0 212 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 CRLS1Q9UJA2 301 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 UNC13CQ8NB66 2214 aa11.75□□□□□ -0.53
CLN8-207ENST00000524258 PRAMEF33A0A0G2JMD5 474 aa11.74□□□□□ -0.53
CLN8-207ENST00000524258 ZCWPW2A0A1B0GU75 182 aa11.74□□□□□ -0.53
CLN8-207ENST00000524258 MGAT4DA6NG13 374 aa11.74□□□□□ -0.53
CLN8-207ENST00000524258 TTI1O43156 1089 aa11.74□□□□□ -0.53
CLN8-207ENST00000524258 OR1I1O60431 355 aa11.74□□□□□ -0.53
CLN8-207ENST00000524258 MSH3P20585 1137 aa11.74□□□□□ -0.53
CLN8-207ENST00000524258 CD1CP29017 333 aa11.74□□□□□ -0.53
CLN8-207ENST00000524258 PAFAH1B1P43034 410 aa11.74□□□□□ -0.53
CLN8-207ENST00000524258 GPR3P46089 330 aa11.74□□□□□ -0.53
CLN8-207ENST00000524258 OR1D5P58170 312 aa11.74□□□□□ -0.53
CLN8-207ENST00000524258 NFE2L1Q14494 772 aa11.74□□□□□ -0.53
CLN8-207ENST00000524258 ITIH4Q14624 930 aa11.74□□□□□ -0.53
CLN8-207ENST00000524258 INSCQ1MX18 579 aa11.74□□□□□ -0.53
CLN8-207ENST00000524258 MSS51Q4VC12 460 aa11.74□□□□□ -0.53
CLN8-207ENST00000524258 FNBP1LQ5T0N5 605 aa11.74□□□□□ -0.53
CLN8-207ENST00000524258 AFTPHQ6ULP2 937 aa11.74□□□□□ -0.53
CLN8-207ENST00000524258 ZNF574Q6ZN55 896 aaPredicted RBP11.74□□□□□ -0.53
CLN8-207ENST00000524258 SYDE1Q6ZW31 735 aaPredicted RBP11.74□□□□□ -0.53
CLN8-207ENST00000524258 DET1Q7L5Y6 550 aa11.74□□□□□ -0.53
CLN8-207ENST00000524258 AMZ2Q86W34 360 aa11.74□□□□□ -0.53
CLN8-207ENST00000524258 CCNJLQ8IV13 435 aa11.74□□□□□ -0.53
CLN8-207ENST00000524258 PPHLN1Q8NEY8 458 aaKnown RBP11.74□□□□□ -0.53
CLN8-207ENST00000524258 OR2L2Q8NH16 312 aa11.74□□□□□ -0.53
CLN8-207ENST00000524258 OR4L1Q8NH43 312 aa11.74□□□□□ -0.53
CLN8-207ENST00000524258 HEXDCQ8WVB3 486 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms