RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 GK2Q14410 553 aaPredicted RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 GINS1Q14691 196 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 RAB11BQ15907 218 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 PPP1R3AQ16821 1122 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 AAK1Q2M2I8 961 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 TIGD2Q4W5G0 525 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 AGKQ53H12 422 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 STXBP5Q5T5C0 1151 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 PRAMEF17Q5VTA0 474 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 FAM109BQ6ICB4 259 aaPredicted RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 KLHDC10Q6PID8 442 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 DPY19L3Q6ZPD9 716 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 SYT13Q7L8C5 426 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 FASTKD5Q7L8L6 764 aaKnown RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 PIWIL4Q7Z3Z4 852 aaKnown RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 SYVN1Q86TM6 617 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 MCATQ8IVS2 390 aaKnown RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 RYBPQ8N488 228 aaPredicted RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 TC2NQ8N9U0 490 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 OR5T3Q8NGG3 340 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 OR52K1Q8NGK4 314 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 OR6P1Q8NGX9 317 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 FRS2Q8WU20 508 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 KCTD7Q96MP8 289 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 TRNT1Q96Q11 434 aaKnown RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 ITPAQ9BY32 194 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 OR8D2Q9GZM6 311 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 PDGFDQ9GZP0 370 aaPredicted RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 SLC5A7Q9GZV3 580 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 SLC38A1Q9H2H9 487 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 HIPK2Q9H2X6 1198 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 MTG2Q9H4K7 406 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 CATSPERBQ9H7T0 1116 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 UGT1A7Q9HAW7 530 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 UGT1A10Q9HAW8 530 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 UGT1A8Q9HAW9 530 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 NT5MQ9NPB1 228 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 KCNH7Q9NS40 1196 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 DCAF16Q9NXF7 216 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 ACTR3BQ9P1U1 418 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 TRMT112Q9UI30 125 aaKnown RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 SCP2D1Q9UJQ7 156 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 ENTPD4Q9Y227 616 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 FAM96BQ9Y3D0 163 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 RAP2CQ9Y3L5 183 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 NPIPA5A0A0B4J1W7 369 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 A0A0G2JLW4 131 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 PITPNM1O00562 1244 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 ACOX3O15254 700 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 SH3BGRLO75368 114 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 BEST1O76090 585 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 KAT7O95251 611 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 GJB6O95452 261 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 MT-CO2P00403 227 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 GNRH1P01148 92 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 TFE3P19532 575 aaPredicted RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 GPD1P21695 349 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 BMP6P22004 513 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 GNRHRP30968 328 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 GRK4P32298 578 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 GRIA3P42263 894 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 GPR1P46091 355 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 RPS9P46781 194 aaKnown RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 GNPDA1P46926 289 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 NSUN2Q08J23 767 aaKnown RBP eCLIP3.55□□□□□ -1.84
USP53-205ENST00000509769 TRIM28Q13263 835 aaKnown RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 PKP1Q13835 747 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 LRP8Q14114 963 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 BCL2A1Q16548 175 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 NDUFA9Q16795 377 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 SH3D19Q5HYK7 790 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 ZNF667Q5HYK9 610 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 TPRG1LQ5T0D9 272 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 DCST2Q5T1A1 773 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 SLX4IPQ5VYV7 408 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 USPL1Q5W0Q7 1092 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 LMBRD2Q68DH5 695 aaPredicted RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 ZNF613Q6PF04 617 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 ZNF773Q6PK81 442 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 SSX6Q7RTT6 188 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 ZNF720Q7Z2F6 126 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 CARM1Q86X55 608 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 TOMM5Q8N4H5 51 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 SUN3Q8TAQ9 357 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 MAPK15Q8TD08 544 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 UTP15Q8TED0 518 aaKnown RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 HASPINQ8TF76 798 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 SMPDL3AQ92484 453 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 SMARCD2Q92925 531 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 MED15Q96RN5 788 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 TBCBQ99426 244 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 PAFAH2Q99487 392 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 PRRX2Q99811 253 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 CBWD1Q9BRT8 395 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 COMMD4Q9H0A8 199 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 FBRSL1Q9HCM7 1045 aaKnown RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 HHATLQ9HCP6 504 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 SMCO4Q9NRQ5 59 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 LRRC4BQ9NT99 713 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 TBC1D13Q9NVG8 400 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms