RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 OR2T12Q8NG77 320 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 OMA1Q96E52 524 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 SEMA3CQ99985 751 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 LRRC61Q9BV99 259 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 RAB11FIP5Q9BXF6 653 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 SLC28A3Q9HAS3 691 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 CHST11Q9NPF2 352 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 MPP6Q9NZW5 540 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 RIPOR2Q9Y4F9 1068 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 TDRD15B5MCY1 1934 aaKnown RBP2.44□□□□□ -2.02
NUP54-208ENST00000508604 PRRC2AP48634 2157 aaKnown RBP2.44□□□□□ -2.02
NUP54-208ENST00000508604 EIF4E1BA6NMX2 242 aaKnown RBP2.44□□□□□ -2.02
NUP54-208ENST00000508604 NGFP01138 241 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 ZNF182P17025 639 aaPredicted RBP2.44□□□□□ -2.02
NUP54-208ENST00000508604 ELAVL2Q12926 359 aaKnown RBP2.44□□□□□ -2.02
NUP54-208ENST00000508604 BRD3Q15059 726 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 COL28A1Q2UY09 1125 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 MAP9Q49MG5 647 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 FBXO47Q5MNV8 452 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 NAA35Q5VZE5 725 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 LSMEM2Q8N112 164 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 RAB42Q8N4Z0 105 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 SLC5A8Q8N695 610 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 RASL10AQ92737 203 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 KIF1BPQ96EK5 621 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 SLX1AQ9BQ83 275 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 LAT2Q9GZY6 243 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 SLC6A13Q9NSD5 602 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 LRWD1Q9UFC0 647 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 YIPF1Q9Y548 306 aa2.44□□□□□ -2.02
NUP54-208ENST00000508604 IFIT1P09914 478 aaKnown RBP2.43□□□□□ -2.02
NUP54-208ENST00000508604 UGT1A4P22310 534 aa2.43□□□□□ -2.02
NUP54-208ENST00000508604 CTSCP53634 463 aa2.43□□□□□ -2.02
NUP54-208ENST00000508604 ARL4CP56559 192 aa2.43□□□□□ -2.02
NUP54-208ENST00000508604 KHDRBS1Q07666 443 aaKnown RBP eCLIP2.43□□□□□ -2.022e-6■□□□□ 10.7
NUP54-208ENST00000508604 FGFBP1Q14512 234 aa2.43□□□□□ -2.02
NUP54-208ENST00000508604 GSTA3Q16772 222 aa2.43□□□□□ -2.02
NUP54-208ENST00000508604 Q75L30 129 aa2.43□□□□□ -2.02
NUP54-208ENST00000508604 PLD3Q8IV08 490 aa2.43□□□□□ -2.02
NUP54-208ENST00000508604 PM20D2Q8IYS1 436 aa2.43□□□□□ -2.02
NUP54-208ENST00000508604 EMC1Q8N766 993 aa2.43□□□□□ -2.02
NUP54-208ENST00000508604 ZPLD1Q8TCW7 415 aa2.43□□□□□ -2.02
NUP54-208ENST00000508604 SUSD6Q92537 303 aa2.43□□□□□ -2.02
NUP54-208ENST00000508604 RRNAD1Q96FB5 475 aaKnown RBP2.43□□□□□ -2.02
NUP54-208ENST00000508604 TMEM68Q96MH6 324 aa2.43□□□□□ -2.02
NUP54-208ENST00000508604 SMC6Q96SB8 1091 aa2.43□□□□□ -2.02
NUP54-208ENST00000508604 TRIM6Q9C030 488 aaPredicted RBP2.43□□□□□ -2.02
NUP54-208ENST00000508604 ASAH2Q9NR71 780 aa2.43□□□□□ -2.02
NUP54-208ENST00000508604 PPP1R14DQ9NXH3 145 aa2.43□□□□□ -2.02
NUP54-208ENST00000508604 UBA2Q9UBT2 640 aaPredicted RBP2.43□□□□□ -2.02
NUP54-208ENST00000508604 TSPAN4O14817 238 aa2.42□□□□□ -2.02
NUP54-208ENST00000508604 EIF5BO60841 1220 aaKnown RBP2.42□□□□□ -2.02
NUP54-208ENST00000508604 DUS4LO95620 317 aaKnown RBP2.42□□□□□ -2.02
NUP54-208ENST00000508604 KRTAP1-4P0C5Y4 121 aa2.42□□□□□ -2.02
NUP54-208ENST00000508604 ACADMP11310 421 aa2.42□□□□□ -2.02
NUP54-208ENST00000508604 HNF4AP41235 474 aa2.42□□□□□ -2.02
NUP54-208ENST00000508604 WLSQ5T9L3 541 aa2.42□□□□□ -2.02
NUP54-208ENST00000508604 ANO1Q5XXA6 986 aa2.42□□□□□ -2.02
NUP54-208ENST00000508604 BBS12Q6ZW61 710 aa2.42□□□□□ -2.02
NUP54-208ENST00000508604 SLC16A9Q7RTY1 509 aa2.42□□□□□ -2.02
NUP54-208ENST00000508604 PTOV1Q86YD1 416 aa2.42□□□□□ -2.02
NUP54-208ENST00000508604 C1orf52Q8N6N3 182 aaKnown RBP2.42□□□□□ -2.02
NUP54-208ENST00000508604 OR1J2Q8NGS2 313 aa2.42□□□□□ -2.02
NUP54-208ENST00000508604 IGSF8Q969P0 613 aa2.42□□□□□ -2.02
NUP54-208ENST00000508604 SLC47A1Q96FL8 570 aa2.42□□□□□ -2.02
NUP54-208ENST00000508604 CLEC7AQ9BXN2 247 aa2.42□□□□□ -2.02
NUP54-208ENST00000508604 UPF3AQ9H1J1 476 aaKnown RBP2.42□□□□□ -2.02
NUP54-208ENST00000508604 RANBP17Q9H2T7 1088 aaKnown RBP2.42□□□□□ -2.02
NUP54-208ENST00000508604 PANK3Q9H999 370 aa2.42□□□□□ -2.02
NUP54-208ENST00000508604 HSF4Q9ULV5 492 aa2.42□□□□□ -2.02
NUP54-208ENST00000508604 IGHV4-61A0A0C4DH41 118 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 CDC123O75794 336 aaPredicted RBP2.41□□□□□ -2.02
NUP54-208ENST00000508604 MLYCDO95822 493 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 IGHV4-59P01825 116 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 CAPN2P17655 700 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 ARL1P40616 181 aaPredicted RBP2.41□□□□□ -2.02
NUP54-208ENST00000508604 UBE3AQ05086 875 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 CAMK1Q14012 370 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 PSRC1Q6PGN9 363 aaPredicted RBP2.41□□□□□ -2.02
NUP54-208ENST00000508604 ADGRA1Q86SQ6 560 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 CCT6BQ92526 530 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 GLIS2Q9BZE0 524 aaPredicted RBP2.41□□□□□ -2.02
NUP54-208ENST00000508604 PRKRIP1Q9H875 184 aaPredicted RBP2.41□□□□□ -2.02
NUP54-208ENST00000508604 KIF9Q9HAQ2 790 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 GPR83Q9NYM4 423 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 FLRT3Q9NZU0 649 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 SLC25A10Q9UBX3 287 aaPredicted RBP2.41□□□□□ -2.02
NUP54-208ENST00000508604 HAO1Q9UJM8 370 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 SLC7A7Q9UM01 511 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 CROCCQ5TZA2 2017 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 OR6C76A6NM76 312 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 ZNF197O14709 1029 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 NXPH2O95156 264 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 GRK6P43250 576 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 KRTAP10-1P60331 282 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 CDR2Q01850 454 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 CDC16Q13042 620 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 MFAP5Q13361 173 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 NECTIN1Q15223 517 aa2.41□□□□□ -2.02
NUP54-208ENST00000508604 LCE1CQ5T751 118 aa2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms