RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 SF3B4Q15427 424 aaKnown RBP eCLIP3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 KYNUQ16719 465 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 GAGE2EQ4V326 116 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 TMEM35AQ53FP2 167 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 ERMARDQ5T6L9 678 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 GAGE2AQ6NT46 116 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 ZNF534Q76KX8 674 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 ATG9AQ7Z3C6 839 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 C1orf87Q8N0U7 546 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 TSPAN14Q8NG11 270 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 SLC20A1Q8WUM9 679 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 RTP4Q96DX8 246 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 CDCA5Q96FF9 252 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 PGAP3Q96FM1 320 aaPredicted RBP3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 RADILQ96JH8 1075 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 LYZL4Q96KX0 146 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 LRMDAQ9H2I8 198 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 UBTD1Q9HAC8 227 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 CCDC177Q9NQR7 707 aaPredicted RBP3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 CRNNQ9UBG3 495 aaPredicted RBP3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 GAGE2DQ9UEU5 116 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 VDAC3Q9Y277 283 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 WBP11Q9Y2W2 641 aaKnown RBP3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 A0A0G2JPF8 293 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 MAGEA13PA6NCF6 341 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 HNRNPCL3B7ZW38 293 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 SMAD6O43541 496 aaKnown RBP3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 PRAMEF11O60813 436 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 PSMD10O75832 226 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 APOA4P06727 396 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 HNRNPCL4P0DMR1 293 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 MYOD1P15172 320 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 AMPHP49418 695 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 PDLIM4P50479 330 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 DSCR9P59020 149 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 SNRPEP62304 92 aaKnown RBP3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 SLC20A2Q08357 652 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 ZNF234Q14588 700 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 SLC39A14Q15043 492 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 SNAPC1Q16533 368 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 CCDC96Q2M329 555 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 CRY2Q49AN0 593 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 CBWD6Q4V339 395 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 FAM133BQ5BKY9 247 aaKnown RBP3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 CBWD3Q5JTY5 395 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 GFRALQ6UXV0 394 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 ZNF704Q6ZNC4 412 aaPredicted RBP3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 DENND5BQ6ZUT9 1274 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 ADIPOR2Q86V24 386 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 TMPRSS12Q86WS5 348 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 CEP57Q86XR8 500 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 SPATA2LQ8IUW3 424 aaPredicted RBP3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 ODF3L1Q8IXM7 274 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 FBXO39Q8N4B4 442 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 RBMXL3Q8N7X1 1067 aaKnown RBP3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 TDRD5Q8NAT2 981 aaKnown RBP3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 LILRB1Q8NHL6 650 aaPredicted RBP3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 SLC38A5Q8WUX1 472 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 FIG4Q92562 907 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 ADGRG7Q96K78 797 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 NEK1Q96PY6 1258 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 SLC22A12Q96S37 553 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 AP1M1Q9BXS5 423 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 OR10A4Q9H209 315 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 GAREM1Q9H706 876 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 TCP11L1Q9NUJ3 509 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 MALT1Q9UDY8 824 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 PCDHAC2Q9Y5I4 1007 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 ZNF541Q9H0D2 1346 aa3.95□□□□□ -1.78
HMGB1P28-201ENST00000507778 OR2M5A3KFT3 312 aa3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 LACTBL1A8MY62 500 aa3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 HNRNPCL2B2RXH8 293 aa3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 ZNF587BE7ETH6 402 aa3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 H7C0S8 307 aa3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 PLK4O00444 970 aa3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 BUD23O43709 281 aaKnown RBP3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 TBX10O75333 385 aa3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 CREG1O75629 220 aa3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 ZBTB11O95625 1053 aaPredicted RBP3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 MYBL1P10243 752 aa3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 POLR2CP19387 275 aaPredicted RBP3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 USP8P40818 1118 aa3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 CCR3P51677 355 aa3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 PPP5CP53041 499 aa3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 ISL1P61371 349 aa3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 EEF1A1P68104 462 aaKnown RBP3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 GTF2H2Q13888 395 aa3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 IL11RAQ14626 422 aa3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 MELKQ14680 651 aa3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 KIF19Q2TAC6 998 aa3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 TCP11X2Q5H9J9 407 aa3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 EEF1A1P5Q5VTE0 462 aa3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 ALS2CLQ60I27 953 aa3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 FAM109BQ6ICB4 259 aaPredicted RBP3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 TMEM211Q6ICI0 200 aa3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 KRT80Q6KB66 452 aa3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 GTF2H2CQ6P1K8 395 aa3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 Q75L30 129 aa3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 PLPPR4Q7Z2D5 763 aa3.94□□□□□ -1.78
HMGB1P28-201ENST00000507778 SATL1Q86VE3 508 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms