RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 SEPT5Q99719 369 aaPredicted RBP4.05□□□□□ -1.76
USP54-217ENST00000498213 MSTO1Q9BUK6 570 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 DPCDQ9BVM2 203 aaPredicted RBP4.05□□□□□ -1.76
USP54-217ENST00000498213 ELOVL4Q9GZR5 314 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 TMEM245Q9H330 911 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 CUEDC2Q9H467 287 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 PNPLA8Q9NP80 782 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 NRIP3Q9NQ35 241 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 RNF7Q9UBF6 113 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 CDH9Q9ULB4 789 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 SH2B3Q9UQQ2 575 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 ZNF510Q9Y2H8 683 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 MED16Q9Y2X0 877 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 PTPRDP23468 1912 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 MYLKQ15746 1914 aa4.05□□□□□ -1.76
USP54-217ENST00000498213 ATP8B3O60423 1300 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 A0A1B0GTQ1 180 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 A0A1W2PQF6 199 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 FAM92AA1XBS5 289 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 DNAJC9-AS1A6NH13 148 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 LACTBL1A8MY62 500 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 H3BML4 177 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 CYB561D2O14569 222 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 SLC16A4O15374 487 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 PAPSS1O43252 624 aaPredicted RBP4.04□□□□□ -1.76
USP54-217ENST00000498213 AKAP10O43572 662 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 TIMM44O43615 452 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 UBXN7O94888 489 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 TNFSF15O95150 251 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 KAT7O95251 611 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 IGLV3-19P01714 112 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 APODP05090 189 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 PLA2G4BP0C869 781 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 CKMT2P17540 419 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 ANXA13P27216 316 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 ATICP31939 592 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 DDIT3P35638 169 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 LIPAP38571 399 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 MATR3P43243 847 aaKnown RBP eCLIP4.04□□□□□ -1.76
USP54-217ENST00000498213 EPHB1P54762 984 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 UCP3P55916 312 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 GAD2Q05329 585 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 ZBTB16Q05516 673 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 STK3Q13188 491 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 ILKQ13418 452 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 GTF2H3Q13889 308 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 MORC3Q14149 939 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 SMTNL2Q2TAL5 461 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 SLC39A12Q504Y0 691 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 DCAF6Q58WW2 860 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 DEPDC1Q5TB30 811 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 TXNDC8Q6A555 127 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 NAPRTQ6XQN6 538 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 SPNS3Q6ZMD2 512 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 MAEAQ7L5Y9 396 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 ZNF720Q7Z2F6 126 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 TMEM150AQ86TG1 271 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 SPATA2LQ8IUW3 424 aaPredicted RBP4.04□□□□□ -1.76
USP54-217ENST00000498213 BRSK2Q8IWQ3 736 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 SLC15A4Q8N697 577 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 SEMA6DQ8NFY4 1073 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 OR6B3Q8NGW1 331 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 OR10T2Q8NGX3 314 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 C9orf43Q8TAL5 461 aaPredicted RBP4.04□□□□□ -1.76
USP54-217ENST00000498213 GOLGA5Q8TBA6 731 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 IPO4Q8TEX9 1081 aaKnown RBP4.04□□□□□ -1.76
USP54-217ENST00000498213 C18orf25Q96B23 403 aaPredicted RBP4.04□□□□□ -1.76
USP54-217ENST00000498213 SKA1Q96BD8 255 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 ATXN7L3BQ96GX2 97 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 MRGPRX1Q96LB2 322 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 ACOX2Q99424 681 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 PKMYT1Q99640 499 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 PYM1Q9BRP8 204 aaKnown RBP4.04□□□□□ -1.76
USP54-217ENST00000498213 KIFC3Q9BVG8 833 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 STRA6Q9BX79 667 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 ADNPQ9H2P0 1102 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 FBXO44Q9H4M3 255 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 TM9SF3Q9HD45 589 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 TMEM51Q9NW97 253 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 DPP3Q9NY33 737 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 WSB2Q9NYS7 404 aaPredicted RBP4.04□□□□□ -1.76
USP54-217ENST00000498213 GCNT4Q9P109 453 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 WDR35Q9P2L0 1181 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 TUBGCP4Q9UGJ1 667 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 ERRFI1Q9UJM3 462 aaPredicted RBP4.04□□□□□ -1.76
USP54-217ENST00000498213 AGO2Q9UKV8 859 aaKnown RBP4.04□□□□□ -1.76
USP54-217ENST00000498213 NDRG4Q9ULP0 352 aaKnown RBP4.04□□□□□ -1.76
USP54-217ENST00000498213 SCML1Q9UN30 329 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 ARID2Q68CP9 1835 aa4.04□□□□□ -1.76
USP54-217ENST00000498213 RTTNQ86VV8 2226 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 A0A088AWK7 358 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 TBC1D3BA6NDS4 549 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 ZNF840PA6NDX5 716 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 KCNJ18B7U540 433 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 K7ENM7 598 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 FAM155BO75949 473 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 OAS1P00973 400 aaKnown RBP4.03□□□□□ -1.76
USP54-217ENST00000498213 LDLRP01130 860 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 EDN1P05305 212 aa4.03□□□□□ -1.76
USP54-217ENST00000498213 CELA2AP08217 269 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms