RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 OSGEPL1Q9H4B0 414 aa8.05□□□□□ -1.12
USP39-216ENST00000490193 AKIRIN1Q9H9L7 192 aaPredicted RBP8.05□□□□□ -1.12
USP39-216ENST00000490193 PCDH9Q9HC56 1237 aa8.05□□□□□ -1.12
USP39-216ENST00000490193 PCDH18Q9HCL0 1135 aa8.05□□□□□ -1.12
USP39-216ENST00000490193 TRIM39Q9HCM9 518 aa8.05□□□□□ -1.12
USP39-216ENST00000490193 CASS4Q9NQ75 786 aa8.05□□□□□ -1.12
USP39-216ENST00000490193 ACSS2Q9NR19 701 aa8.05□□□□□ -1.12
USP39-216ENST00000490193 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.05□□□□□ -1.12
USP39-216ENST00000490193 HAUS2Q9NVX0 235 aa8.05□□□□□ -1.12
USP39-216ENST00000490193 SLC23A2Q9UGH3 650 aa8.05□□□□□ -1.12
USP39-216ENST00000490193 RARRES3Q9UL19 164 aa8.05□□□□□ -1.12
USP39-216ENST00000490193 CSMD1Q96PZ7 3565 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 IGHV5-51A0A0C4DH38 117 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 SSU72P8A0A1W2PR75 194 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 ANKRD66B4E2M5 251 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 MATN3O15232 486 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 VEGFDO43915 354 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 SLC25A14O95258 325 aaPredicted RBP8.04□□□□□ -1.12
USP39-216ENST00000490193 JCHAINP01591 159 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 RARAP10276 462 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 FOLR1P15328 257 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 TCF4P15884 667 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 ZNF7P17097 686 aaPredicted RBP8.04□□□□□ -1.12
USP39-216ENST00000490193 IL4RP24394 825 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 CCNCP24863 283 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 ZNF165P49910 485 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 RPS18P62269 152 aaKnown RBP8.04□□□□□ -1.12
USP39-216ENST00000490193 RPS15P62841 145 aaKnown RBP8.04□□□□□ -1.12
USP39-216ENST00000490193 ACY1Q03154 408 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 ITKQ08881 620 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 NIPAL4Q0D2K0 466 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 CHAF1BQ13112 559 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 MRPL49Q13405 166 aaKnown RBP8.04□□□□□ -1.12
USP39-216ENST00000490193 GPR18Q14330 331 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 PAFAH1B3Q15102 231 aaKnown RBP8.04□□□□□ -1.12
USP39-216ENST00000490193 QPCTQ16769 361 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 INSCQ1MX18 579 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 EIF2S3LQ2VIR3 472 aaKnown RBP8.04□□□□□ -1.12
USP39-216ENST00000490193 PRR30Q53SZ7 412 aaPredicted RBP8.04□□□□□ -1.12
USP39-216ENST00000490193 ZNF569Q5MCW4 686 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 IZUMO3Q5VZ72 239 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 SLC6A19Q695T7 634 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 APTXQ7Z2E3 356 aaKnown RBP8.04□□□□□ -1.12
USP39-216ENST00000490193 ADGRG6Q86SQ4 1221 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 LRRTM4Q86VH4 590 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 ZNF547Q8IVP9 402 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 NIPA2Q8N8Q9 360 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 SIDT2Q8NBJ9 832 aaKnown RBP8.04□□□□□ -1.12
USP39-216ENST00000490193 LPCAT1Q8NF37 534 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 CCHCR1Q8TD31 782 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 HSPH1Q92598 858 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 GLYATL1Q969I3 302 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 PNPLA2Q96AD5 504 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 EID2BQ96D98 161 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 TRIM11Q96F44 468 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 TCTN2Q96GX1 697 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 ZNF514Q96K75 400 aaPredicted RBP8.04□□□□□ -1.12
USP39-216ENST00000490193 PCMTD1Q96MG8 357 aaPredicted RBP8.04□□□□□ -1.12
USP39-216ENST00000490193 LRFN5Q96NI6 719 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 TSGA13Q96PP4 275 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 CD180Q99467 661 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 MLPHQ9BV36 600 aaPredicted RBP8.04□□□□□ -1.12
USP39-216ENST00000490193 NUP62CLQ9H1M0 184 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 OR2AG1Q9H205 316 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 MRPL47Q9HD33 250 aaKnown RBP8.04□□□□□ -1.12
USP39-216ENST00000490193 LATS2Q9NRM7 1088 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 FANCLQ9NW38 375 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 GMPR2Q9P2T1 348 aaKnown RBP8.04□□□□□ -1.12
USP39-216ENST00000490193 ERRFI1Q9UJM3 462 aaPredicted RBP8.04□□□□□ -1.12
USP39-216ENST00000490193 FARSAQ9Y285 508 aaKnown RBP8.04□□□□□ -1.12
USP39-216ENST00000490193 APCP25054 2843 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 C2CD3Q4AC94 2353 aa8.04□□□□□ -1.12
USP39-216ENST00000490193 ARGFXA6NJG6 315 aa8.03□□□□□ -1.12
USP39-216ENST00000490193 OR52A4PA6NMU1 304 aa8.03□□□□□ -1.12
USP39-216ENST00000490193 PDZK1P1A8MUH7 402 aa8.03□□□□□ -1.12
USP39-216ENST00000490193 TMCO5BA8MYB1 307 aa8.03□□□□□ -1.12
USP39-216ENST00000490193 MFSD11O43934 449 aa8.03□□□□□ -1.12
USP39-216ENST00000490193 CPNE3O75131 537 aaKnown RBP8.03□□□□□ -1.12
USP39-216ENST00000490193 FTLP02792 175 aaPredicted RBP8.03□□□□□ -1.12
USP39-216ENST00000490193 MMP2P08253 660 aa8.03□□□□□ -1.12
USP39-216ENST00000490193 RAB40ALP0C0E4 278 aa8.03□□□□□ -1.12
USP39-216ENST00000490193 MYBL1P10243 752 aa8.03□□□□□ -1.12
USP39-216ENST00000490193 IDSP22304 550 aa8.03□□□□□ -1.12
USP39-216ENST00000490193 FECHP22830 423 aa8.03□□□□□ -1.12
USP39-216ENST00000490193 COL8A1P27658 744 aa8.03□□□□□ -1.12
USP39-216ENST00000490193 TNFRSF8P28908 595 aa8.03□□□□□ -1.12
USP39-216ENST00000490193 PTGIRP43119 386 aa8.03□□□□□ -1.12
USP39-216ENST00000490193 CCL11P51671 97 aa8.03□□□□□ -1.12
USP39-216ENST00000490193 PPP1CAP62136 330 aa8.03□□□□□ -1.12
USP39-216ENST00000490193 SLC25A11Q02978 314 aaKnown RBP8.03□□□□□ -1.12
USP39-216ENST00000490193 UBXN1Q04323 297 aa8.03□□□□□ -1.12
USP39-216ENST00000490193 PIGHQ14442 188 aaPredicted RBP8.03□□□□□ -1.12
USP39-216ENST00000490193 IFI16Q16666 785 aaKnown RBP8.03□□□□□ -1.12
USP39-216ENST00000490193 TDRD12Q587J7 1177 aaKnown RBP8.03□□□□□ -1.12
USP39-216ENST00000490193 NCBP2-AS2Q69YL0 99 aa8.03□□□□□ -1.12
USP39-216ENST00000490193 TXNRD3NBQ6F5E7 133 aa8.03□□□□□ -1.12
USP39-216ENST00000490193 IRGCQ6NXR0 463 aa8.03□□□□□ -1.12
USP39-216ENST00000490193 FAM199XQ6PEV8 388 aaPredicted RBP8.03□□□□□ -1.12
USP39-216ENST00000490193 CRTC3Q6UUV7 619 aa8.03□□□□□ -1.12
USP39-216ENST00000490193 FAM92BQ6ZTR7 304 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms