RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 CCDC142Q17RM4 750 aa4.06□□□□□ -1.76
PTCD3-216ENST00000487043 CRY2Q49AN0 593 aa4.06□□□□□ -1.76
PTCD3-216ENST00000487043 SOWAHCQ53LP3 525 aaPredicted RBP4.06□□□□□ -1.76
PTCD3-216ENST00000487043 ZNF628Q5EBL2 1059 aa4.06□□□□□ -1.76
PTCD3-216ENST00000487043 CEP78Q5JTW2 689 aa4.06□□□□□ -1.76
PTCD3-216ENST00000487043 PIK3CD-AS1Q5SR53 167 aa4.06□□□□□ -1.76
PTCD3-216ENST00000487043 LRCH2Q5VUJ6 765 aa4.06□□□□□ -1.76
PTCD3-216ENST00000487043 KRT80Q6KB66 452 aa4.06□□□□□ -1.76
PTCD3-216ENST00000487043 SHQ1Q6PI26 577 aaKnown RBP4.06□□□□□ -1.76
PTCD3-216ENST00000487043 ZNF66Q6ZN08 573 aa4.06□□□□□ -1.76
PTCD3-216ENST00000487043 HIST3H2AQ7L7L0 130 aa4.06□□□□□ -1.76
PTCD3-216ENST00000487043 LINGO2Q7L985 606 aa4.06□□□□□ -1.76
PTCD3-216ENST00000487043 UBE2Q1Q7Z7E8 422 aa4.06□□□□□ -1.76
PTCD3-216ENST00000487043 CAMK1DQ8IU85 385 aa4.06□□□□□ -1.76
PTCD3-216ENST00000487043 SCYL3Q8IZE3 742 aa4.06□□□□□ -1.76
PTCD3-216ENST00000487043 RBFAQ8N0V3 343 aa4.06□□□□□ -1.76
PTCD3-216ENST00000487043 IGFBPL1Q8WX77 278 aa4.06□□□□□ -1.76
PTCD3-216ENST00000487043 SECISBP2LQ93073 1101 aaKnown RBP4.06□□□□□ -1.76
PTCD3-216ENST00000487043 OTULINQ96BN8 352 aa4.06□□□□□ -1.76
PTCD3-216ENST00000487043 PTERQ96BW5 349 aa4.06□□□□□ -1.76
PTCD3-216ENST00000487043 MOAP1Q96BY2 351 aa4.06□□□□□ -1.76
PTCD3-216ENST00000487043 DGAT2Q96PD7 388 aa4.06□□□□□ -1.76
PTCD3-216ENST00000487043 WDR83Q9BRX9 315 aaKnown RBP4.06□□□□□ -1.76
PTCD3-216ENST00000487043 PCGF1Q9BSM1 259 aa4.06□□□□□ -1.76
PTCD3-216ENST00000487043 MRPL1Q9BYD6 325 aaKnown RBP4.06□□□□□ -1.76
PTCD3-216ENST00000487043 OPA3Q9H6K4 179 aa4.06□□□□□ -1.76
PTCD3-216ENST00000487043 ZWILCHQ9H900 591 aa4.06□□□□□ -1.76
PTCD3-216ENST00000487043 PSD3Q9NYI0 1048 aa4.06□□□□□ -1.76
PTCD3-216ENST00000487043 CWC15Q9P013 229 aaKnown RBP4.06□□□□□ -1.76
PTCD3-216ENST00000487043 DBNLQ9UJU6 430 aaKnown RBP4.06□□□□□ -1.76
PTCD3-216ENST00000487043 NFE2L3Q9Y4A8 694 aa4.06□□□□□ -1.76
PTCD3-216ENST00000487043 CCL27Q9Y4X3 112 aa4.06□□□□□ -1.76
PTCD3-216ENST00000487043 LAMB2P55268 1798 aa4.06□□□□□ -1.76
PTCD3-216ENST00000487043 QSER1Q2KHR3 1735 aa4.06□□□□□ -1.76
PTCD3-216ENST00000487043 TUBGCP6Q96RT7 1819 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 NRXN2Q9P2S2 1712 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 LOC102723996A0A087X1L8 192 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 A0A1W2PR77 199 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 ATP2A1O14983 1001 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 BBOX1O75936 387 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 QDPRP09417 244 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 MYZAPP0CAP1 466 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 ATP5F1P24539 256 aaPredicted RBP4.05□□□□□ -1.76
PTCD3-216ENST00000487043 ALDH1B1P30837 517 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 CTNNA1P35221 906 aaKnown RBP4.05□□□□□ -1.76
PTCD3-216ENST00000487043 THPOP40225 353 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 ARHGAP25P42331 645 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 PRCPP42785 496 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 MATR3P43243 847 aaKnown RBP eCLIP4.05□□□□□ -1.76
PTCD3-216ENST00000487043 ZNF41P51814 821 aaPredicted RBP4.05□□□□□ -1.76
PTCD3-216ENST00000487043 ECT2LQ008S8 904 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 GRSF1Q12849 480 aaKnown RBP eCLIP4.05□□□□□ -1.76
PTCD3-216ENST00000487043 SNTB1Q13884 538 aaKnown RBP4.05□□□□□ -1.76
PTCD3-216ENST00000487043 SCARB2Q14108 478 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 LETM2Q2VYF4 491 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 MMEL1Q495T6 779 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 CCDC158Q5M9N0 1113 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 PAPD7Q5XG87 772 aaKnown RBP4.05□□□□□ -1.76
PTCD3-216ENST00000487043 KRT79Q5XKE5 535 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 PQLC2Q6ZP29 291 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 TRILQ7L0X0 811 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 CNGA4Q8IV77 575 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 ARID3BQ8IVW6 561 aaPredicted RBP4.05□□□□□ -1.76
PTCD3-216ENST00000487043 SFTPA2Q8IWL1 248 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 MB21D2Q8IYB1 491 aaPredicted RBP4.05□□□□□ -1.76
PTCD3-216ENST00000487043 MMP21Q8N119 569 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 TTC30BQ8N4P2 665 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 BOLLQ8N9W6 283 aaKnown RBP4.05□□□□□ -1.76
PTCD3-216ENST00000487043 SCCPDHQ8NBX0 429 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 SLC44A5Q8NCS7 719 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 GSDMBQ8TAX9 411 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 GRAPLQ8TC17 118 aaPredicted RBP4.05□□□□□ -1.76
PTCD3-216ENST00000487043 HASPINQ8TF76 798 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 ZNF622Q969S3 477 aaKnown RBP eCLIP4.05□□□□□ -1.762e-8■■□□□ 13.9
PTCD3-216ENST00000487043 ERGIC1Q969X5 290 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 NAF1Q96HR8 494 aaKnown RBP4.05□□□□□ -1.76
PTCD3-216ENST00000487043 SIGLEC11Q96RL6 698 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 POLDIP3Q9BY77 421 aaKnown RBP4.05□□□□□ -1.76
PTCD3-216ENST00000487043 EDEM3Q9BZQ6 932 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 RIOX1Q9H6W3 641 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 PTGFRNQ9P2B2 879 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 ZNHIT2Q9UHR6 403 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 ZNF112Q9UJU3 913 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 ANAPC5Q9UJX4 755 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 ANAPC2Q9UJX6 822 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 RCOR1Q9UKL0 485 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 EXO1Q9UQ84 846 aaKnown RBP4.05□□□□□ -1.76
PTCD3-216ENST00000487043 CLIC4Q9Y696 253 aa4.05□□□□□ -1.76
PTCD3-216ENST00000487043 A0A1B0GVM2 712 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 SMIM35A0A1B0GVV1 85 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 TRBC2A0A5B9 178 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 LNP1A1A4G5 178 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 PLRG1O43660 514 aaKnown RBP4.04□□□□□ -1.76
PTCD3-216ENST00000487043 PROP1O75360 226 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 TADA2AO75478 443 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 BCL10O95999 233 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 TPOP07202 933 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 CYC1P08574 325 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 VDRP11473 427 aa4.04□□□□□ -1.76
PTCD3-216ENST00000487043 SCG2P13521 617 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms