RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 VPS35Q96QK1 796 aa12.79□□□□□ -0.36
HDAC6-227ENST00000485102 OSGEPL1Q9H4B0 414 aa12.79□□□□□ -0.36
HDAC6-227ENST00000485102 LRRC4CQ9HCJ2 640 aa12.79□□□□□ -0.36
HDAC6-227ENST00000485102 LCMT1Q9UIC8 334 aa12.79□□□□□ -0.36
HDAC6-227ENST00000485102 PCDHGA9Q9Y5G4 932 aaKnown RBP12.79□□□□□ -0.36
HDAC6-227ENST00000485102 A0A087X0T9 212 aa12.78□□□□□ -0.36
HDAC6-227ENST00000485102 PIPSLA2A3N6 862 aa12.78□□□□□ -0.36
HDAC6-227ENST00000485102 PDZK1P1A8MUH7 402 aa12.78□□□□□ -0.36
HDAC6-227ENST00000485102 KIF1CO43896 1103 aaKnown RBP12.78□□□□□ -0.36
HDAC6-227ENST00000485102 KATNA1O75449 491 aa12.78□□□□□ -0.36
HDAC6-227ENST00000485102 RASSF9O75901 435 aa12.78□□□□□ -0.36
HDAC6-227ENST00000485102 PROSCO94903 275 aa12.78□□□□□ -0.36
HDAC6-227ENST00000485102 CDK14O94921 469 aa12.78□□□□□ -0.36
HDAC6-227ENST00000485102 SERPING1P05155 500 aa12.78□□□□□ -0.36
HDAC6-227ENST00000485102 FAM228BP0C875 321 aa12.78□□□□□ -0.36
HDAC6-227ENST00000485102 SPTBP11277 2137 aa12.78□□□□□ -0.36
HDAC6-227ENST00000485102 NR1D1P20393 614 aa12.78□□□□□ -0.36
HDAC6-227ENST00000485102 DMPKQ09013 629 aa12.78□□□□□ -0.36
HDAC6-227ENST00000485102 GPR18Q14330 331 aa12.78□□□□□ -0.36
HDAC6-227ENST00000485102 UGT8Q16880 541 aa12.78□□□□□ -0.36
HDAC6-227ENST00000485102 TDRD12Q587J7 1177 aaKnown RBP12.78□□□□□ -0.36
HDAC6-227ENST00000485102 ZNF648Q5T619 568 aaPredicted RBP12.78□□□□□ -0.36
HDAC6-227ENST00000485102 ALKBH5Q6P6C2 394 aaKnown RBP12.78□□□□□ -0.36
HDAC6-227ENST00000485102 ZNF517Q6ZMY9 492 aaPredicted RBP12.78□□□□□ -0.36
HDAC6-227ENST00000485102 KMT5CQ86Y97 462 aa12.78□□□□□ -0.36
HDAC6-227ENST00000485102 CCNYQ8ND76 341 aa12.78□□□□□ -0.36
HDAC6-227ENST00000485102 RNF157Q96PX1 679 aa12.78□□□□□ -0.36
HDAC6-227ENST00000485102 TWSG1Q9GZX9 223 aa12.78□□□□□ -0.36
HDAC6-227ENST00000485102 RBSNQ9H1K0 784 aa12.78□□□□□ -0.36
HDAC6-227ENST00000485102 SLC25A51Q9H1U9 297 aa12.78□□□□□ -0.36
HDAC6-227ENST00000485102 PDE7BQ9NP56 450 aa12.78□□□□□ -0.36
HDAC6-227ENST00000485102 ARFGAP3Q9NP61 516 aa12.78□□□□□ -0.36
HDAC6-227ENST00000485102 ZNHIT6Q9NWK9 470 aaKnown RBP12.78□□□□□ -0.36
HDAC6-227ENST00000485102 LNPEPQ9UIQ6 1025 aa12.78□□□□□ -0.36
HDAC6-227ENST00000485102 TMPRSS11EQ9UL52 423 aa12.78□□□□□ -0.36
HDAC6-227ENST00000485102 NENFQ9UMX5 172 aa12.78□□□□□ -0.36
HDAC6-227ENST00000485102 CACNA1DQ01668 2161 aa12.78□□□□□ -0.36
HDAC6-227ENST00000485102 CDC14CA4D256 554 aa12.77□□□□□ -0.37
HDAC6-227ENST00000485102 KCNK1O00180 336 aa12.77□□□□□ -0.37
HDAC6-227ENST00000485102 VPS4BO75351 444 aa12.77□□□□□ -0.37
HDAC6-227ENST00000485102 PDGFAP04085 211 aa12.77□□□□□ -0.37
HDAC6-227ENST00000485102 BPIP17213 487 aa12.77□□□□□ -0.37
HDAC6-227ENST00000485102 VCLP18206 1134 aa12.77□□□□□ -0.37
HDAC6-227ENST00000485102 FECHP22830 423 aa12.77□□□□□ -0.37
HDAC6-227ENST00000485102 CDK18Q07002 472 aa12.77□□□□□ -0.37
HDAC6-227ENST00000485102 ZBTB17Q13105 803 aa12.77□□□□□ -0.37
HDAC6-227ENST00000485102 LAMB3Q13751 1172 aa12.77□□□□□ -0.37
HDAC6-227ENST00000485102 CAPRIN2Q6IMN6 1127 aaKnown RBP12.77□□□□□ -0.37
HDAC6-227ENST00000485102 PWWP2BQ6NUJ5 590 aa12.77□□□□□ -0.37
HDAC6-227ENST00000485102 KLHL35Q6PF15 583 aa12.77□□□□□ -0.37
HDAC6-227ENST00000485102 SYVN1Q86TM6 617 aa12.77□□□□□ -0.37
HDAC6-227ENST00000485102 TMEM135Q86UB9 458 aa12.77□□□□□ -0.37
HDAC6-227ENST00000485102 NT5DC3Q86UY8 548 aa12.77□□□□□ -0.37
HDAC6-227ENST00000485102 CNGA4Q8IV77 575 aa12.77□□□□□ -0.37
HDAC6-227ENST00000485102 BRSK1Q8TDC3 778 aa12.77□□□□□ -0.37
HDAC6-227ENST00000485102 CT55Q8WUE5 264 aa12.77□□□□□ -0.37
HDAC6-227ENST00000485102 ZNF830Q96NB3 372 aaPredicted RBP12.77□□□□□ -0.37
HDAC6-227ENST00000485102 CD180Q99467 661 aa12.77□□□□□ -0.37
HDAC6-227ENST00000485102 UVRAGQ9P2Y5 699 aa12.77□□□□□ -0.37
HDAC6-227ENST00000485102 RARRES3Q9UL19 164 aa12.77□□□□□ -0.37
HDAC6-227ENST00000485102 VPS4AQ9UN37 437 aa12.77□□□□□ -0.37
HDAC6-227ENST00000485102 SHOC2Q9UQ13 582 aa12.77□□□□□ -0.37
HDAC6-227ENST00000485102 LUC7L2Q9Y383 392 aaKnown RBP12.77□□□□□ -0.37
HDAC6-227ENST00000485102 PCDHGB7Q9Y5F8 929 aa12.77□□□□□ -0.37
HDAC6-227ENST00000485102 DNMT3AQ9Y6K1 912 aaPredicted RBP12.77□□□□□ -0.37
HDAC6-227ENST00000485102 PRRC2CQ9Y520 2896 aaKnown RBP12.76□□□□□ -0.37
HDAC6-227ENST00000485102 DOPEY1Q5JWR5 2465 aa12.76□□□□□ -0.37
HDAC6-227ENST00000485102 IGHV5-51A0A0C4DH38 117 aa12.76□□□□□ -0.37
HDAC6-227ENST00000485102 OR52A4PA6NMU1 304 aa12.76□□□□□ -0.37
HDAC6-227ENST00000485102 TIAF1O95411 115 aa12.76□□□□□ -0.37
HDAC6-227ENST00000485102 LPOP22079 712 aaPredicted RBP12.76□□□□□ -0.37
HDAC6-227ENST00000485102 KDELR1P24390 212 aa12.76□□□□□ -0.37
HDAC6-227ENST00000485102 RPL10P27635 214 aaKnown RBP12.76□□□□□ -0.37
HDAC6-227ENST00000485102 PTPN4P29074 926 aa12.76□□□□□ -0.37
HDAC6-227ENST00000485102 CASP14P31944 242 aa12.76□□□□□ -0.37
HDAC6-227ENST00000485102 HMGCLP35914 325 aa12.76□□□□□ -0.37
HDAC6-227ENST00000485102 PBX1P40424 430 aa12.76□□□□□ -0.37
HDAC6-227ENST00000485102 SSR1P43307 286 aaKnown RBP12.76□□□□□ -0.37
HDAC6-227ENST00000485102 TAS2R40P59535 323 aa12.76□□□□□ -0.37
HDAC6-227ENST00000485102 ZBED6P86452 979 aa12.76□□□□□ -0.37
HDAC6-227ENST00000485102 ACY1Q03154 408 aa12.76□□□□□ -0.37
HDAC6-227ENST00000485102 TMEM115Q12893 351 aaPredicted RBP12.76□□□□□ -0.37
HDAC6-227ENST00000485102 GALNT3Q14435 633 aa12.76□□□□□ -0.37
HDAC6-227ENST00000485102 KHDC1Q4VXA5 237 aaKnown RBP12.76□□□□□ -0.37
HDAC6-227ENST00000485102 FHL5Q5TD97 284 aa12.76□□□□□ -0.37
HDAC6-227ENST00000485102 ALS2CLQ60I27 953 aa12.76□□□□□ -0.37
HDAC6-227ENST00000485102 SLC9A4Q6AI14 798 aa12.76□□□□□ -0.37
HDAC6-227ENST00000485102 CRTC3Q6UUV7 619 aa12.76□□□□□ -0.37
HDAC6-227ENST00000485102 CARFQ8N187 725 aa12.76□□□□□ -0.37
HDAC6-227ENST00000485102 D2HGDHQ8N465 521 aa12.76□□□□□ -0.37
HDAC6-227ENST00000485102 PLD5Q8N7P1 536 aa12.76□□□□□ -0.37
HDAC6-227ENST00000485102 OR8K5Q8NH50 307 aa12.76□□□□□ -0.37
HDAC6-227ENST00000485102 LRRN4Q8WUT4 740 aa12.76□□□□□ -0.37
HDAC6-227ENST00000485102 ZFPM2Q8WW38 1151 aa12.76□□□□□ -0.37
HDAC6-227ENST00000485102 CXorf40BQ96DE9 158 aa12.76□□□□□ -0.37
HDAC6-227ENST00000485102 GPR63Q9BZJ6 419 aa12.76□□□□□ -0.37
HDAC6-227ENST00000485102 ACTL8Q9H568 366 aa12.76□□□□□ -0.37
HDAC6-227ENST00000485102 CUEDC1Q9NWM3 386 aaPredicted RBP12.76□□□□□ -0.37
HDAC6-227ENST00000485102 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.76□□□□□ -0.37
HDAC6-227ENST00000485102 DNAJC16Q9Y2G8 782 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms