RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 ITGB6P18564 788 aa21.19■□□□□ 0.98
USP40-215ENST00000484528 IDSP22304 550 aa21.19■□□□□ 0.98
USP40-215ENST00000484528 SPAM1P38567 509 aa21.19■□□□□ 0.98
USP40-215ENST00000484528 LEPRP48357 1165 aaKnown RBP21.19■□□□□ 0.98
USP40-215ENST00000484528 SEPHS1P49903 392 aa21.19■□□□□ 0.98
USP40-215ENST00000484528 FOXM1Q08050 763 aa21.19■□□□□ 0.98
USP40-215ENST00000484528 GPR18Q14330 331 aa21.19■□□□□ 0.98
USP40-215ENST00000484528 SLC1A5Q15758 541 aa21.19■□□□□ 0.98
USP40-215ENST00000484528 PPP2R5EQ16537 467 aa21.19■□□□□ 0.98
USP40-215ENST00000484528 RCOR2Q8IZ40 523 aa21.19■□□□□ 0.98
USP40-215ENST00000484528 NLGN4XQ8N0W4 816 aa21.19■□□□□ 0.98
USP40-215ENST00000484528 NLGN4YQ8NFZ3 816 aaPredicted RBP21.19■□□□□ 0.98
USP40-215ENST00000484528 CXorf40BQ96DE9 158 aa21.19■□□□□ 0.98
USP40-215ENST00000484528 C9orf72Q96LT7 481 aa21.19■□□□□ 0.98
USP40-215ENST00000484528 TTC25Q96NG3 672 aa21.19■□□□□ 0.98
USP40-215ENST00000484528 FCRL5Q96RD9 977 aa21.19■□□□□ 0.98
USP40-215ENST00000484528 SPRY4Q9C004 299 aa21.19■□□□□ 0.98
USP40-215ENST00000484528 TRABDQ9H4I3 376 aa21.19■□□□□ 0.98
USP40-215ENST00000484528 GPN2Q9H9Y4 310 aaPredicted RBP21.19■□□□□ 0.98
USP40-215ENST00000484528 UCK1Q9HA47 277 aa21.19■□□□□ 0.98
USP40-215ENST00000484528 STARD5Q9NSY2 213 aa21.19■□□□□ 0.98
USP40-215ENST00000484528 SIDT1Q9NXL6 827 aaKnown RBP21.19■□□□□ 0.98
USP40-215ENST00000484528 IL17CQ9P0M4 197 aa21.19■□□□□ 0.98
USP40-215ENST00000484528 RSPH14Q9UHP6 348 aa21.19■□□□□ 0.98
USP40-215ENST00000484528 WDR37Q9Y2I8 494 aa21.19■□□□□ 0.98
USP40-215ENST00000484528 LOC101059948A0A1B0GTJ6 334 aa21.18■□□□□ 0.98
USP40-215ENST00000484528 C9P02748 559 aa21.18■□□□□ 0.98
USP40-215ENST00000484528 CTSCP53634 463 aa21.18■□□□□ 0.98
USP40-215ENST00000484528 PTPRCAPQ14761 206 aa21.18■□□□□ 0.98
USP40-215ENST00000484528 C11orf63Q6NUN7 778 aa21.18■□□□□ 0.98
USP40-215ENST00000484528 ABRAXAS1Q6UWZ7 409 aa21.18■□□□□ 0.98
USP40-215ENST00000484528 XKR5Q6UX68 686 aa21.18■□□□□ 0.98
USP40-215ENST00000484528 RBM41Q96IZ5 413 aaKnown RBP21.18■□□□□ 0.98
USP40-215ENST00000484528 VAT1Q99536 393 aa21.18■□□□□ 0.98
USP40-215ENST00000484528 POT1Q9NUX5 634 aa21.18■□□□□ 0.98
USP40-215ENST00000484528 GLYATL1P3A0A0U1RQE8 302 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 MACROD2A1Z1Q3 448 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 H7C0C1 242 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 CAPN5O15484 640 aaPredicted RBP21.17■□□□□ 0.98
USP40-215ENST00000484528 NKX2-8O15522 239 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 KIF1CO43896 1103 aaKnown RBP21.17■□□□□ 0.98
USP40-215ENST00000484528 RASSF9O75901 435 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 LCA5LO95447 670 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 ANKRD34CP0C6C1 535 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 PRKAR1AP10644 381 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 VCLP18206 1134 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 HLA-DPA1P20036 260 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 RBL1P28749 1068 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 PBLDP30039 288 aaPredicted RBP21.17■□□□□ 0.98
USP40-215ENST00000484528 ATP5OP48047 213 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 SH3BP2P78314 561 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 MPP3Q13368 585 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 SPA17Q15506 151 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 CCDC181Q5TID7 509 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 AGAP9Q5VTM2 703 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 BORAQ6PGQ7 559 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 SARM1Q6SZW1 724 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 BBS12Q6ZW61 710 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 DAAM2Q86T65 1068 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 RASGEF1AQ8N9B8 481 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 KIAA1143Q96AT1 154 aaPredicted RBP21.17■□□□□ 0.98
USP40-215ENST00000484528 FICDQ9BVA6 458 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 FSD1LQ9BXM9 530 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 SLC40A1Q9NP59 571 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 HACD3Q9P035 362 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 IL17BQ9UHF5 180 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 PSMD13Q9UNM6 376 aa21.17■□□□□ 0.98
USP40-215ENST00000484528 SBDSQ9Y3A5 250 aaKnown RBP eCLIP21.17■□□□□ 0.98
USP40-215ENST00000484528 OR2AG2A6NM03 316 aa21.16■□□□□ 0.98
USP40-215ENST00000484528 ZNF891A8MT65 544 aaPredicted RBP21.16■□□□□ 0.98
USP40-215ENST00000484528 HACD1B0YJ81 288 aa21.16■□□□□ 0.98
USP40-215ENST00000484528 GAPDHSO14556 408 aaPredicted RBP21.16■□□□□ 0.98
USP40-215ENST00000484528 AGTP01019 485 aa21.16■□□□□ 0.98
USP40-215ENST00000484528 EPOP01588 193 aa21.16■□□□□ 0.98
USP40-215ENST00000484528 ZNF28P17035 718 aa21.16■□□□□ 0.98
USP40-215ENST00000484528 MAP4P27816 1152 aaKnown RBP21.16■□□□□ 0.98
USP40-215ENST00000484528 CAPZBP47756 277 aa21.16■□□□□ 0.98
USP40-215ENST00000484528 OLIG2Q13516 323 aa21.16■□□□□ 0.98
USP40-215ENST00000484528 GPRC6AQ5T6X5 926 aa21.16■□□□□ 0.98
USP40-215ENST00000484528 IRGCQ6NXR0 463 aa21.16■□□□□ 0.98
USP40-215ENST00000484528 FAM83HQ6ZRV2 1179 aaPredicted RBP21.16■□□□□ 0.98
USP40-215ENST00000484528 FAM92BQ6ZTR7 304 aa21.16■□□□□ 0.98
USP40-215ENST00000484528 GPR150Q8NGU9 434 aa21.16■□□□□ 0.98
USP40-215ENST00000484528 NAT14Q8WUY8 206 aa21.16■□□□□ 0.98
USP40-215ENST00000484528 ELMO2Q96JJ3 720 aa21.16■□□□□ 0.98
USP40-215ENST00000484528 FAM118BQ9BPY3 351 aa21.16■□□□□ 0.98
USP40-215ENST00000484528 APOL2Q9BQE5 337 aa21.16■□□□□ 0.98
USP40-215ENST00000484528 GORASP1Q9BQQ3 440 aa21.16■□□□□ 0.98
USP40-215ENST00000484528 ZPBPQ9BS86 351 aa21.16■□□□□ 0.98
USP40-215ENST00000484528 PKP3Q9Y446 797 aa21.16■□□□□ 0.98
USP40-215ENST00000484528 TMEM184BQ9Y519 407 aaPredicted RBP21.16■□□□□ 0.98
USP40-215ENST00000484528 APOC4-APOC2K7ER74 178 aa21.15■□□□□ 0.98
USP40-215ENST00000484528 PPFIA2O75334 1257 aa21.15■□□□□ 0.98
USP40-215ENST00000484528 POP7O75817 140 aaKnown RBP21.15■□□□□ 0.98
USP40-215ENST00000484528 DLGAP3O95886 979 aa21.15■□□□□ 0.98
USP40-215ENST00000484528 APOC2P02655 101 aa21.15■□□□□ 0.98
USP40-215ENST00000484528 HALP42357 657 aa21.15■□□□□ 0.98
USP40-215ENST00000484528 PPP1CAP62136 330 aa21.15■□□□□ 0.98
USP40-215ENST00000484528 ZDHHC20Q5W0Z9 365 aa21.15■□□□□ 0.98
USP40-215ENST00000484528 WASH2PQ6VEQ5 465 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms