RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 KLHL38Q2WGJ6 581 aa14.98□□□□□ -0.01
NPHP4-205ENST00000466897 KBTBD12Q3ZCT8 623 aa14.98□□□□□ -0.01
NPHP4-205ENST00000466897 ZNF648Q5T619 568 aaPredicted RBP14.98□□□□□ -0.01
NPHP4-205ENST00000466897 DOK6Q6PKX4 331 aa14.98□□□□□ -0.01
NPHP4-205ENST00000466897 LDB1Q86U70 411 aaPredicted RBP14.98□□□□□ -0.01
NPHP4-205ENST00000466897 GALNT13Q8IUC8 556 aa14.98□□□□□ -0.01
NPHP4-205ENST00000466897 ZNF547Q8IVP9 402 aa14.98□□□□□ -0.01
NPHP4-205ENST00000466897 PHACTR4Q8IZ21 702 aa14.98□□□□□ -0.01
NPHP4-205ENST00000466897 HNRNPLLQ8WVV9 542 aaKnown RBP14.98□□□□□ -0.01
NPHP4-205ENST00000466897 OR2M4Q96R27 311 aa14.98□□□□□ -0.01
NPHP4-205ENST00000466897 PHOX2BQ99453 314 aa14.98□□□□□ -0.01
NPHP4-205ENST00000466897 CPNE1Q99829 537 aa14.98□□□□□ -0.01
NPHP4-205ENST00000466897 TIMM29Q9BSF4 260 aa14.98□□□□□ -0.01
NPHP4-205ENST00000466897 SLC13A1Q9BZW2 595 aa14.98□□□□□ -0.01
NPHP4-205ENST00000466897 MRPL40Q9NQ50 206 aaKnown RBP14.98□□□□□ -0.01
NPHP4-205ENST00000466897 SMYD2Q9NRG4 433 aa14.98□□□□□ -0.01
NPHP4-205ENST00000466897 KLF15Q9UIH9 416 aa14.98□□□□□ -0.01
NPHP4-205ENST00000466897 GNPTGQ9UJJ9 305 aa14.98□□□□□ -0.01
NPHP4-205ENST00000466897 FRYLO94915 3013 aa14.98□□□□□ -0.01
NPHP4-205ENST00000466897 A0A1B0GTQ1 180 aa14.97□□□□□ -0.01
NPHP4-205ENST00000466897 C17orf113A0A1B0GUU1 675 aa14.97□□□□□ -0.01
NPHP4-205ENST00000466897 OR1I1O60431 355 aa14.97□□□□□ -0.01
NPHP4-205ENST00000466897 ERLIN1O75477 346 aa14.97□□□□□ -0.01
NPHP4-205ENST00000466897 AHSGP02765 367 aa14.97□□□□□ -0.01
NPHP4-205ENST00000466897 FTH1P02794 183 aa14.97□□□□□ -0.01
NPHP4-205ENST00000466897 OR56A5P0C7T3 313 aa14.97□□□□□ -0.01
NPHP4-205ENST00000466897 ZNF883P0CG24 379 aa14.97□□□□□ -0.01
NPHP4-205ENST00000466897 JUNDP17535 347 aa14.97□□□□□ -0.01
NPHP4-205ENST00000466897 ENGP17813 658 aa14.97□□□□□ -0.01
NPHP4-205ENST00000466897 CD9P21926 228 aa14.97□□□□□ -0.01
NPHP4-205ENST00000466897 GABRB3P28472 473 aa14.97□□□□□ -0.01
NPHP4-205ENST00000466897 CLCNKAP51800 687 aa14.97□□□□□ -0.01
NPHP4-205ENST00000466897 CTSCP53634 463 aa14.97□□□□□ -0.01
NPHP4-205ENST00000466897 MPP1Q00013 466 aa14.97□□□□□ -0.01
NPHP4-205ENST00000466897 DMPKQ09013 629 aa14.97□□□□□ -0.01
NPHP4-205ENST00000466897 SMAD1Q15797 465 aaKnown RBP14.97□□□□□ -0.01
NPHP4-205ENST00000466897 HLA-BQ31612 363 aa14.97□□□□□ -0.01
NPHP4-205ENST00000466897 UBAP2Q5T6F2 1119 aaKnown RBP14.97□□□□□ -0.01
NPHP4-205ENST00000466897 KCTD16Q68DU8 428 aa14.97□□□□□ -0.01
NPHP4-205ENST00000466897 C11orf96Q7Z7L8 435 aa14.97□□□□□ -0.01
NPHP4-205ENST00000466897 TRAPPC5Q8IUR0 188 aa14.97□□□□□ -0.01
NPHP4-205ENST00000466897 FSTL5Q8N475 847 aaPredicted RBP14.97□□□□□ -0.01
NPHP4-205ENST00000466897 TSACCQ96A04 125 aaPredicted RBP14.97□□□□□ -0.01
NPHP4-205ENST00000466897 CCDC97Q96F63 343 aaPredicted RBP14.97□□□□□ -0.01
NPHP4-205ENST00000466897 BIRC8Q96P09 236 aa14.97□□□□□ -0.01
NPHP4-205ENST00000466897 TSSK1BQ9BXA7 367 aa14.97□□□□□ -0.01
NPHP4-205ENST00000466897 CARS2Q9HA77 564 aaKnown RBP14.97□□□□□ -0.01
NPHP4-205ENST00000466897 PPCSQ9HAB8 311 aa14.97□□□□□ -0.01
NPHP4-205ENST00000466897 CYP4F12Q9HCS2 524 aa14.97□□□□□ -0.01
NPHP4-205ENST00000466897 FBXO6Q9NRD1 293 aaPredicted RBP14.97□□□□□ -0.01
NPHP4-205ENST00000466897 SEMA4GQ9NTN9 838 aa14.97□□□□□ -0.01
NPHP4-205ENST00000466897 DNAJC28Q9NX36 388 aa14.97□□□□□ -0.01
NPHP4-205ENST00000466897 APOBEC3BQ9UH17 382 aaKnown RBP14.97□□□□□ -0.01
NPHP4-205ENST00000466897 KNL1Q8NG31 2342 aa14.97□□□□□ -0.01
NPHP4-205ENST00000466897 GPR179Q6PRD1 2367 aa14.96□□□□□ -0.01
NPHP4-205ENST00000466897 UBA6A0AVT1 1052 aaPredicted RBP14.96□□□□□ -0.01
NPHP4-205ENST00000466897 LNP1A1A4G5 178 aa14.96□□□□□ -0.01
NPHP4-205ENST00000466897 PRR19A6NJB7 356 aa14.96□□□□□ -0.01
NPHP4-205ENST00000466897 OR2AG2A6NM03 316 aa14.96□□□□□ -0.01
NPHP4-205ENST00000466897 CXorf49A8MYA2 514 aaPredicted RBP14.96□□□□□ -0.01
NPHP4-205ENST00000466897 HAUS5O94927 633 aa14.96□□□□□ -0.01
NPHP4-205ENST00000466897 GP5P40197 560 aa14.96□□□□□ -0.01
NPHP4-205ENST00000466897 GNPDA1P46926 289 aa14.96□□□□□ -0.01
NPHP4-205ENST00000466897 CD151P48509 253 aa14.96□□□□□ -0.01
NPHP4-205ENST00000466897 CCT8P50990 548 aa14.96□□□□□ -0.01
NPHP4-205ENST00000466897 SLC29A2Q14542 456 aa14.96□□□□□ -0.01
NPHP4-205ENST00000466897 UAP1Q16222 522 aaPredicted RBP14.96□□□□□ -0.01
NPHP4-205ENST00000466897 ZNF789Q5FWF6 425 aa14.96□□□□□ -0.01
NPHP4-205ENST00000466897 TMEM220Q6QAJ8 160 aa14.96□□□□□ -0.01
NPHP4-205ENST00000466897 STRA8Q7Z7C7 330 aa14.96□□□□□ -0.01
NPHP4-205ENST00000466897 ZC3HC1Q86WB0 502 aaKnown RBP14.96□□□□□ -0.01
NPHP4-205ENST00000466897 HID1Q8IV36 788 aa14.96□□□□□ -0.01
NPHP4-205ENST00000466897 CLDN19Q8N6F1 224 aa14.96□□□□□ -0.01
NPHP4-205ENST00000466897 GPBAR1Q8TDU6 330 aa14.96□□□□□ -0.01
NPHP4-205ENST00000466897 SGF29Q96ES7 293 aa14.96□□□□□ -0.01
NPHP4-205ENST00000466897 PANX3Q96QZ0 392 aa14.96□□□□□ -0.01
NPHP4-205ENST00000466897 RHOJQ9H4E5 214 aa14.96□□□□□ -0.01
NPHP4-205ENST00000466897 TXNDC16Q9P2K2 825 aa14.96□□□□□ -0.01
NPHP4-205ENST00000466897 SPASTQ9UBP0 616 aa14.96□□□□□ -0.01
NPHP4-205ENST00000466897 PCYT1BQ9Y5K3 369 aaPredicted RBP14.96□□□□□ -0.01
NPHP4-205ENST00000466897 PSAT1Q9Y617 370 aa14.96□□□□□ -0.01
NPHP4-205ENST00000466897 PRSS21Q9Y6M0 314 aa14.96□□□□□ -0.01
NPHP4-205ENST00000466897 CSNK1G3Q9Y6M4 447 aa14.96□□□□□ -0.01
NPHP4-205ENST00000466897 COL5A1P20908 1838 aaPredicted RBP14.96□□□□□ -0.01
NPHP4-205ENST00000466897 ARHGEF17Q96PE2 2063 aaPredicted RBP14.96□□□□□ -0.02
NPHP4-205ENST00000466897 MGAT4DA6NG13 374 aa14.95□□□□□ -0.02
NPHP4-205ENST00000466897 PIAS2O75928 621 aa14.95□□□□□ -0.02
NPHP4-205ENST00000466897 NUDT17P0C025 328 aa14.95□□□□□ -0.02
NPHP4-205ENST00000466897 PKMP14618 531 aaKnown RBP14.95□□□□□ -0.02
NPHP4-205ENST00000466897 VCLP18206 1134 aa14.95□□□□□ -0.02
NPHP4-205ENST00000466897 TGM1P22735 817 aa14.95□□□□□ -0.02
NPHP4-205ENST00000466897 EPHA8P29322 1005 aaPredicted RBP14.95□□□□□ -0.02
NPHP4-205ENST00000466897 HSD17B3P37058 310 aa14.95□□□□□ -0.02
NPHP4-205ENST00000466897 EIF3BP55884 814 aaKnown RBP14.95□□□□□ -0.02
NPHP4-205ENST00000466897 SPEM2Q0P670 501 aa14.95□□□□□ -0.02
NPHP4-205ENST00000466897 ELOCQ15369 112 aa14.95□□□□□ -0.02
NPHP4-205ENST00000466897 SHBQ15464 509 aa14.95□□□□□ -0.02
NPHP4-205ENST00000466897 CCDC6Q16204 474 aa14.95□□□□□ -0.02
NPHP4-205ENST00000466897 ZNF658BQ4V348 819 aaPredicted RBP14.95□□□□□ -0.02
NPHP4-205ENST00000466897 CTSL3PQ5NE16 218 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms