RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 FBXW11Q9UKB1 542 aa18.83■□□□□ 0.6
CCDC88B-204ENST00000463837 XRCC1P18887 633 aaPredicted RBP18.83■□□□□ 0.6
CCDC88B-204ENST00000463837 PBX3P40426 434 aa18.83■□□□□ 0.6
CCDC88B-204ENST00000463837 GPD2P43304 727 aa18.83■□□□□ 0.6
CCDC88B-204ENST00000463837 HNRNPDQ14103 355 aaKnown RBP18.83■□□□□ 0.6
CCDC88B-204ENST00000463837 AKIRIN2Q53H80 203 aa18.83■□□□□ 0.6
CCDC88B-204ENST00000463837 PITRM1Q5JRX3 1037 aa18.83■□□□□ 0.6
CCDC88B-204ENST00000463837 GCNT6Q5T4J0 391 aa18.83■□□□□ 0.6
CCDC88B-204ENST00000463837 LCN1P1Q5VSP4 162 aa18.83■□□□□ 0.6
CCDC88B-204ENST00000463837 DOK6Q6PKX4 331 aa18.83■□□□□ 0.6
CCDC88B-204ENST00000463837 TRPV1Q8NER1 839 aa18.83■□□□□ 0.6
CCDC88B-204ENST00000463837 DQX1Q8TE96 717 aaKnown RBP18.83■□□□□ 0.6
CCDC88B-204ENST00000463837 HTATIP2Q9BUP3 242 aa18.83■□□□□ 0.6
CCDC88B-204ENST00000463837 GPC6Q9Y625 555 aaPredicted RBP18.83■□□□□ 0.6
CCDC88B-204ENST00000463837 FMN2Q9NZ56 1722 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 ADAMTS3O15072 1205 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 TYROBPO43914 113 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 GTF2E2P29084 291 aaKnown RBP18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 GTF2H2Q13888 395 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 GPAT3Q53EU6 434 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 GTF2H2CQ6P1K8 395 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 C16orf62Q7Z3J2 963 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 NTAN1Q96AB6 310 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 VMP1Q96GC9 406 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 RACGAP1Q9H0H5 632 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 TMEM138Q9NPI0 162 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 TCRBV7S3A2A0A539 114 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 ECDO95905 644 aaPredicted RBP18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 AQP1P29972 269 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 PTPN5P54829 565 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 DEF8Q6ZN54 512 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 FAM43BQ6ZT52 329 aaPredicted RBP18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 ADGRG6Q86SQ4 1221 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 C11orf65Q8NCR3 313 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 IGFLR1Q9H665 355 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 GULP1Q9UBP9 304 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 XRN1Q8IZH2 1706 aaKnown RBP18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 SCAMP3O14828 347 aaKnown RBP18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 CCNYL3P0C7X3 344 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 NCK1P16333 377 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 PPM1AP35813 382 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 ADAM17P78536 824 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 FAM151BQ6UXP7 276 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 RD3Q7Z3Z2 195 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 TRIM74Q86UV6 250 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 TRIM73Q86UV7 250 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 AZIN2Q96A70 460 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 TBATAQ96M53 351 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 SP140LQ9H930 580 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 TRAV19A0A0A6YYK7 116 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 EI24O14681 340 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 BCAS2O75934 225 aaPredicted RBP18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 C8BP07358 591 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 TNNI3P19429 210 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 CXCR3P49682 368 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 OGFOD2Q6N063 350 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 FBXL19Q6PCT2 694 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 PYROXD2Q8N2H3 581 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 FCRL5Q96RD9 977 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 MAN2B2Q9Y2E5 1009 aa18.82■□□□□ 0.6
CCDC88B-204ENST00000463837 GPR25O00155 361 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 TSPAN1O60635 241 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 IGFBP4P22692 258 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 HERVK_113P63132 956 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 NOMO2Q5JPE7 1267 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 TMPRSS11AQ6ZMR5 421 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 C1GALT1C1Q96EU7 318 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 APOLD1Q96LR9 279 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 NSMCE3Q96MG7 304 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 ERVK-6Q9BXR3 956 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 FAM105AQ9NUU6 356 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 COL20A1Q9P218 1284 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 PCDHB9Q9Y5E1 797 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 CAMTA1Q9Y6Y1 1673 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 TBC1D3BA6NDS4 549 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 MAPKAPK2P49137 400 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 MVKQ03426 396 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 TEAD4Q15561 434 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 SULT1C3Q6IMI6 304 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 ZNF655Q8N720 491 aaPredicted RBP18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 SLC13A3Q8WWT9 602 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 DNAAF2Q9NVR5 837 aaKnown RBP18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 RWDD3Q9Y3V2 267 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 TLR5O60602 858 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 IL1R2P27930 398 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 ERVK-8P63133 956 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 TMEM214Q6NUQ4 689 aaKnown RBP18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 GPR142Q7Z601 462 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 FIBCD1Q8N539 461 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 RASSF5Q8WWW0 418 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 NDRG1Q92597 394 aaKnown RBP18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 ZNF516Q92618 1163 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 MFSD1Q9H3U5 465 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 MIOSQ9NXC5 875 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 TRPS1Q9UHF7 1281 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 PMF1-BGLAPU3KQ54 211 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 CXorf49A8MYA2 514 aaPredicted RBP18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 SLC1A2P43004 574 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 MTAPQ13126 283 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 DIRAS2Q96HU8 199 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms