RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 FAM180BQ6P0A1 224 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.73□□□□□ -0.85
USP54-205ENST00000424265 HPS6Q86YV9 775 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 SYTL1Q8IYJ3 562 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 LINC00518Q8N0U6 118 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 LHFPL5Q8TAF8 219 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 GTF2H4Q92759 462 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 NTAN1Q96AB6 310 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 C12orf57Q99622 126 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 NUSAP1Q9BXS6 441 aaKnown RBP9.73□□□□□ -0.85
USP54-205ENST00000424265 RIC8BQ9NVN3 520 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 FETUBQ9UGM5 382 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 ADGRE2Q9UHX3 823 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 SLC27A5Q9Y2P5 690 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 YIPF1Q9Y548 306 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 GABRR2P28476 465 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 OPRL1P41146 370 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 ARHGDIBP52566 201 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 CAP1Q01518 475 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 TWF1Q12792 350 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 PPP2R5DQ14738 602 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 PLEKHG6Q3KR16 790 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 KIAA0408Q6ZU52 694 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 EFCAB3Q8N7B9 438 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 SNAPC3Q92966 411 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 ARL5BQ96KC2 179 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 BTBD6Q96KE9 485 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 ZYG11BQ9C0D3 744 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 CCDC90BQ9GZT6 254 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 KLHL11Q9NVR0 708 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 CYB5R1Q9UHQ9 305 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 POMPQ9Y244 141 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 RNF103O00237 685 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 AKAP10O43572 662 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 ZNF806P0C7X5 589 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 GK3PQ14409 553 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 RAB39AQ14964 217 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 PMF1Q6P1K2 205 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 TRABD2AQ86V40 505 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 OR7A2PQ8NGA2 310 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 OR8H1Q8NGG4 311 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 SEC14L1Q92503 715 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 TTC9Q92623 222 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 PBXIP1Q96AQ6 731 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 ELMO3Q96BJ8 720 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 EHD3Q9NZN3 535 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 MALT1Q9UDY8 824 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 CDH7Q9ULB5 785 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 JRKO75564 520 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 C8BP07358 591 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 ATP6V1E1P36543 226 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 SOX4Q06945 474 aaPredicted RBP9.72□□□□□ -0.85
USP54-205ENST00000424265 UBAP2LQ14157 1087 aaKnown RBP9.72□□□□□ -0.85
USP54-205ENST00000424265 ELOAQ14241 798 aaKnown RBP9.72□□□□□ -0.85
USP54-205ENST00000424265 TBRG1Q3YBR2 411 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 C2CD6Q53TS8 623 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 PPIL6Q8IXY8 311 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 CLYBLQ8N0X4 340 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 SLC39A11Q8N1S5 342 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 FBXL6Q8N531 539 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 PPHLN1Q8NEY8 458 aaKnown RBP9.72□□□□□ -0.85
USP54-205ENST00000424265 BPIFB6Q8NFQ5 453 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 SLC35F5Q8WV83 523 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 IPCEF1Q8WWN9 437 aaPredicted RBP9.72□□□□□ -0.85
USP54-205ENST00000424265 TMEM121Q9BTD3 319 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 VPS11Q9H270 941 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 PCDH9Q9HC56 1237 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 PCDHB16Q9NRJ7 776 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 SORCS3Q9UPU3 1222 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 DRG1Q9Y295 367 aaKnown RBP9.72□□□□□ -0.85
USP54-205ENST00000424265 MYH11P35749 1972 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 PRR5-ARHGAP8B1AHC4 643 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 PPEF2O14830 753 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 AIM2O14862 343 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 INPPL1O15357 1258 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 KCNH1O95259 989 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 TGDSO95455 350 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 NTRK1P04629 796 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 CD48P09326 243 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 CTSAP10619 480 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 FGFR3P22607 806 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 ARHGAP8P85298 464 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 CCNIQ14094 377 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 SLC1A5Q15758 541 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 SPATS1Q496A3 300 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 KIF18BQ86Y91 864 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 ZNF280BQ86YH2 543 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 SCML4Q8N228 414 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 BHLHE22Q8NFJ8 381 aaPredicted RBP9.72□□□□□ -0.85
USP54-205ENST00000424265 CSGALNACT1Q8TDX6 532 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 APOL4Q9BPW4 351 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 C1orf21Q9H246 121 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 ERI2A8K979 691 aaKnown RBP9.72□□□□□ -0.85
USP54-205ENST00000424265 A8MUA0 341 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 H0Y858 1186 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 TOR1AO14656 332 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 TOR1BO14657 336 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 POU2F1P14859 743 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 GP5P40197 560 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 DSC1Q08554 894 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms