RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 POC5Q8NA72 575 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 ANKHQ9HCJ1 492 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 MYOZ2Q9NPC6 264 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 COMMD8Q9NX08 183 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 C3orf18Q9UK00 162 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 PCDHGA3Q9Y5H0 932 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 RALGAPA2Q2PPJ7 1873 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 BRCA1P38398 1863 aaKnown RBP10.59□□□□□ -0.71
USP54-204ENST00000422491 FAM172BPA6NC97 362 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 SAGE2PA6NJ88 616 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 YJEFN3A6XGL0 299 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 NOTOA8MTQ0 251 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 AREL1O15033 823 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 TBX1O43435 398 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 DLGAP3O95886 979 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 PTTG1O95997 202 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 CST1P01037 141 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 NPR3P17342 541 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 CCNCP24863 283 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 TGFBR1P36897 503 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 SEPHS1P49903 392 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 MTPNP58546 118 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 SLC35A2P78381 396 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 VAC14Q08AM6 782 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 LAPTM5Q13571 262 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 E2F2Q14209 437 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 OR4D1Q15615 310 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 XKR7Q5GH72 579 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 DESI1Q6ICB0 168 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 ENPP6Q6UWR7 440 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 PAQR9Q6ZVX9 377 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 KDELC2Q7Z4H8 507 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 LDB1Q86U70 411 aaPredicted RBP10.59□□□□□ -0.71
USP54-204ENST00000422491 SLC22A15Q8IZD6 547 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 ABI1Q8IZP0 508 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 OR7G1Q8NGA0 311 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 FRS2Q8WU20 508 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 RPL3LQ92901 407 aaKnown RBP10.59□□□□□ -0.71
USP54-204ENST00000422491 LGALS12Q96DT0 336 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 PGAP3Q96FM1 320 aaPredicted RBP10.59□□□□□ -0.71
USP54-204ENST00000422491 SPATA33Q96N06 139 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 C17orf80Q9BSJ5 609 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 FSD1LQ9BXM9 530 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 DUSP21Q9H596 190 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 UTS2RQ9UKP6 389 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 NEUROG3Q9Y4Z2 214 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 MN1Q10571 1320 aaPredicted RBP10.59□□□□□ -0.71
USP54-204ENST00000422491 FAM234BA2RU67 622 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 PABPN1LA6NDY0 278 aaKnown RBP10.59□□□□□ -0.71
USP54-204ENST00000422491 ZBBXA8MT70 800 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 TAF4O00268 1085 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 PRMT5O14744 637 aaPredicted RBP10.59□□□□□ -0.71
USP54-204ENST00000422491 ANGPTL1O95841 491 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 JUNDP17535 347 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 POLR2EP19388 210 aaKnown RBP10.59□□□□□ -0.71
USP54-204ENST00000422491 HOXD11P31277 338 aaPredicted RBP10.59□□□□□ -0.71
USP54-204ENST00000422491 IL18R1Q13478 541 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 RAPSNQ13702 412 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 FBXO47Q5MNV8 452 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 TUBA3EQ6PEY2 450 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 SPESP1Q6UW49 350 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 CLEC20AQ6ZU45 233 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 FKBP9P1Q75LS8 142 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 TMEM179BQ7Z7N9 219 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 B3GALNT2Q8NCR0 500 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 MCFD2Q8NI22 146 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 PROKR1Q8TCW9 393 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 COLEC11Q9BWP8 271 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 OR2B2Q9GZK3 357 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 RNF19AQ9NV58 838 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 DDIT4Q9NX09 232 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 SNTG2Q9NY99 539 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 HOXC10Q9NYD6 342 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 ZIM2Q9NZV7 527 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 TMEFF2Q9UIK5 374 aaPredicted RBP10.59□□□□□ -0.71
USP54-204ENST00000422491 AKT3Q9Y243 479 aa10.59□□□□□ -0.71
USP54-204ENST00000422491 EIF3LQ9Y262 564 aaKnown RBP10.59□□□□□ -0.71
USP54-204ENST00000422491 GRXCR2A6NFK2 248 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 DFFAO00273 331 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 TNPO2O14787 897 aaKnown RBP10.58□□□□□ -0.72
USP54-204ENST00000422491 HS6ST1O60243 411 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 PRKD3O94806 890 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 S1PR4O95977 384 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 EGFRP00533 1210 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 HLA-DQB2P05538 268 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 MZF1P28698 734 aaPredicted RBP10.58□□□□□ -0.72
USP54-204ENST00000422491 GRIK1P39086 918 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 TIAL1Q01085 375 aaKnown RBP eCLIP10.58□□□□□ -0.72
USP54-204ENST00000422491 LCP2Q13094 533 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 DGCR6Q14129 220 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 NPTX1Q15818 432 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 PPP2R2DQ66LE6 453 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 PM20D1Q6GTS8 502 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 LAIR1Q6GTX8 287 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 PRR23BQ6ZRT6 265 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 ARMCX6Q7L4S7 300 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 NECAB2Q7Z6G3 386 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 RAB44Q7Z6P3 723 aaPredicted RBP10.58□□□□□ -0.72
USP54-204ENST00000422491 B3GNT8Q7Z7M8 397 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 ZFAND4Q86XD8 727 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms