RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 TRIM55Q9BYV6 548 aa12.72□□□□□ -0.37
LINC00339-202ENST00000416769 AKIRIN1Q9H9L7 192 aaPredicted RBP12.72□□□□□ -0.37
LINC00339-202ENST00000416769 ZNF624Q9P2J8 865 aaPredicted RBP12.72□□□□□ -0.37
LINC00339-202ENST00000416769 CPNE7Q9UBL6 633 aa12.72□□□□□ -0.37
LINC00339-202ENST00000416769 HIVEP3Q5T1R4 2406 aa12.72□□□□□ -0.37
LINC00339-202ENST00000416769 ESPL1Q14674 2120 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 C1orf232A0A0U1RR37 186 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 LRRD1A4D1F6 860 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 CDC14CA4D256 554 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 C3orf70A6NLC5 250 aaPredicted RBP12.71□□□□□ -0.37
LINC00339-202ENST00000416769 KATNA1O75449 491 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 KIAA0754O94854 1291 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 SLC4A1P02730 911 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 KRT1P04264 644 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 MMP2P08253 660 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 CETN2P41208 172 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 GARSP41250 739 aaKnown RBP12.71□□□□□ -0.37
LINC00339-202ENST00000416769 MARCKSL1P49006 195 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 SPINT3P49223 89 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 EPHB1P54762 984 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 GALNT2Q10471 571 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 KLRB1Q12918 225 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 CHAF1BQ13112 559 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 DPYSL3Q14195 570 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 TAZQ16635 292 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 PAPD7Q5XG87 772 aaKnown RBP12.71□□□□□ -0.37
LINC00339-202ENST00000416769 CPZQ66K79 652 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 CERS6Q6ZMG9 384 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 LYSMD3Q7Z3D4 306 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 MAML1Q92585 1016 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 ALG3Q92685 438 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 RNF25Q96BH1 459 aaPredicted RBP12.71□□□□□ -0.37
LINC00339-202ENST00000416769 PBKQ96KB5 322 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 C9orf72Q96LT7 481 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 OR6C1Q96RD1 312 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 NAPGQ99747 312 aaPredicted RBP12.71□□□□□ -0.37
LINC00339-202ENST00000416769 ZNF670Q9BS34 389 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 OR2AG1Q9H205 316 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 OSGEPL1Q9H4B0 414 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 KLC4Q9NSK0 619 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 RBM22Q9NW64 420 aaKnown RBP eCLIP12.71□□□□□ -0.37
LINC00339-202ENST00000416769 KCTD5Q9NXV2 234 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 VPS18Q9P253 973 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 TLK1Q9UKI8 766 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 EFR3BQ9Y2G0 817 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 DNAJC16Q9Y2G8 782 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 MYO9AB2RTY4 2548 aa12.71□□□□□ -0.37
LINC00339-202ENST00000416769 CTAGE9A4FU28 777 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 OR52A4PA6NMU1 304 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 ESPNB1AK53 854 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 CAPN5O15484 640 aaPredicted RBP12.7□□□□□ -0.38
LINC00339-202ENST00000416769 GRID2O43424 1007 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 NUAK1O60285 661 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 ZNF500O60304 480 aaPredicted RBP12.7□□□□□ -0.38
LINC00339-202ENST00000416769 C9P02748 559 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 PYGMP11217 842 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 BRAFP15056 766 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 ZNF30P17039 623 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 GNLYP22749 145 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 CASQ1P31415 396 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 SLC19A1P41440 591 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 CD97P48960 835 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 RPS18P62269 152 aaKnown RBP12.7□□□□□ -0.38
LINC00339-202ENST00000416769 GBE1Q04446 702 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 SLC10A2Q12908 348 aaPredicted RBP12.7□□□□□ -0.38
LINC00339-202ENST00000416769 GALNT3Q14435 633 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 KCNAB1Q14722 419 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 C4orf17Q53FE4 359 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 PRR30Q53SZ7 412 aaPredicted RBP12.7□□□□□ -0.38
LINC00339-202ENST00000416769 ANKRD20A8PQ5CZ79 823 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 RALGPS1Q5JS13 557 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 ALG1LQ6GMV1 187 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 MFSD7Q6UXD7 560 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 SPOCD1Q6ZMY3 1216 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 FAM92BQ6ZTR7 304 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 SLC9B2Q86UD5 537 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 BBS5Q8N3I7 341 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 ESX1Q8N693 406 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 NSMCE1Q8WV22 266 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 FAF2Q96CS3 445 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 RNF157Q96PX1 679 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 HERPUD2Q9BSE4 406 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 MAK16Q9BXY0 300 aaKnown RBP12.7□□□□□ -0.38
LINC00339-202ENST00000416769 CEP41Q9BYV8 373 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 POLR1EQ9GZS1 481 aaKnown RBP12.7□□□□□ -0.38
LINC00339-202ENST00000416769 CARD9Q9H257 536 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 PCDH9Q9HC56 1237 aa12.7□□□□□ -0.38
LINC00339-202ENST00000416769 LILRA5A6NI73 299 aa12.69□□□□□ -0.38
LINC00339-202ENST00000416769 CES2O00748 559 aa12.69□□□□□ -0.38
LINC00339-202ENST00000416769 ANKRD34CP0C6C1 535 aa12.69□□□□□ -0.38
LINC00339-202ENST00000416769 TCP1P17987 556 aaKnown RBP12.69□□□□□ -0.38
LINC00339-202ENST00000416769 PTPN7P35236 360 aa12.69□□□□□ -0.38
LINC00339-202ENST00000416769 CD86P42081 329 aa12.69□□□□□ -0.38
LINC00339-202ENST00000416769 CDKN2BP42772 138 aa12.69□□□□□ -0.38
LINC00339-202ENST00000416769 EPHA4P54764 986 aa12.69□□□□□ -0.38
LINC00339-202ENST00000416769 DRG2P55039 364 aaKnown RBP12.69□□□□□ -0.38
LINC00339-202ENST00000416769 ZBTB17Q13105 803 aa12.69□□□□□ -0.38
LINC00339-202ENST00000416769 PEX6Q13608 980 aa12.69□□□□□ -0.38
LINC00339-202ENST00000416769 PPP2R5EQ16537 467 aa12.69□□□□□ -0.38
LINC00339-202ENST00000416769 TFDP3Q5H9I0 405 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms