RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 TMEM115Q12893 351 aaPredicted RBP11.37□□□□□ -0.59
USP4-204ENST00000416417 IGFBP7Q16270 282 aa11.37□□□□□ -0.59
USP4-204ENST00000416417 CCDC70Q6NSX1 233 aa11.37□□□□□ -0.59
USP4-204ENST00000416417 IRGCQ6NXR0 463 aa11.37□□□□□ -0.59
USP4-204ENST00000416417 SPOCD1Q6ZMY3 1216 aa11.37□□□□□ -0.59
USP4-204ENST00000416417 FAM83HQ6ZRV2 1179 aaPredicted RBP11.37□□□□□ -0.59
USP4-204ENST00000416417 C11orf96Q7Z7L8 435 aa11.37□□□□□ -0.59
USP4-204ENST00000416417 TMEM135Q86UB9 458 aa11.37□□□□□ -0.59
USP4-204ENST00000416417 VSTM4Q8IW00 320 aa11.37□□□□□ -0.59
USP4-204ENST00000416417 RHOT2Q8IXI1 618 aa11.37□□□□□ -0.59
USP4-204ENST00000416417 RHOT1Q8IXI2 618 aa11.37□□□□□ -0.59
USP4-204ENST00000416417 GPR150Q8NGU9 434 aa11.37□□□□□ -0.59
USP4-204ENST00000416417 CXorf40BQ96DE9 158 aa11.37□□□□□ -0.59
USP4-204ENST00000416417 OXNAD1Q96HP4 312 aaPredicted RBP11.37□□□□□ -0.59
USP4-204ENST00000416417 TIMM29Q9BSF4 260 aa11.37□□□□□ -0.59
USP4-204ENST00000416417 EPN3Q9H201 632 aa11.37□□□□□ -0.59
USP4-204ENST00000416417 IL26Q9NPH9 171 aa11.37□□□□□ -0.59
USP4-204ENST00000416417 FAM8A1Q9UBU6 413 aa11.37□□□□□ -0.59
USP4-204ENST00000416417 LCMT1Q9UIC8 334 aa11.37□□□□□ -0.59
USP4-204ENST00000416417 CFAP20Q9Y6A4 193 aaKnown RBP11.37□□□□□ -0.59
USP4-204ENST00000416417 RPS6KL1Q9Y6S9 549 aa11.37□□□□□ -0.59
USP4-204ENST00000416417 K7EM74 188 aa11.36□□□□□ -0.59
USP4-204ENST00000416417 VEGFDO43915 354 aa11.36□□□□□ -0.59
USP4-204ENST00000416417 KATNA1O75449 491 aa11.36□□□□□ -0.59
USP4-204ENST00000416417 TPM3P06753 285 aa11.36□□□□□ -0.59
USP4-204ENST00000416417 TCN2P20062 427 aa11.36□□□□□ -0.59
USP4-204ENST00000416417 IDSP22304 550 aa11.36□□□□□ -0.59
USP4-204ENST00000416417 ABHD18Q0P651 414 aa11.36□□□□□ -0.59
USP4-204ENST00000416417 OLIG2Q13516 323 aa11.36□□□□□ -0.59
USP4-204ENST00000416417 TRIM14Q14142 442 aa11.36□□□□□ -0.59
USP4-204ENST00000416417 KCNAB1Q14722 419 aa11.36□□□□□ -0.59
USP4-204ENST00000416417 CACHD1Q5VU97 1274 aa11.36□□□□□ -0.59
USP4-204ENST00000416417 CERS6Q6ZMG9 384 aa11.36□□□□□ -0.59
USP4-204ENST00000416417 DET1Q7L5Y6 550 aa11.36□□□□□ -0.59
USP4-204ENST00000416417 RASGRP3Q8IV61 690 aa11.36□□□□□ -0.59
USP4-204ENST00000416417 ZNF567Q8N184 647 aa11.36□□□□□ -0.59
USP4-204ENST00000416417 RASGEF1AQ8N9B8 481 aa11.36□□□□□ -0.59
USP4-204ENST00000416417 IPMKQ8NFU5 416 aa11.36□□□□□ -0.59
USP4-204ENST00000416417 BLOC1S5Q8TDH9 187 aa11.36□□□□□ -0.59
USP4-204ENST00000416417 TFB1MQ8WVM0 346 aaKnown RBP11.36□□□□□ -0.59
USP4-204ENST00000416417 COL26A1Q96A83 441 aa11.36□□□□□ -0.59
USP4-204ENST00000416417 MRGPRX2Q96LB1 330 aa11.36□□□□□ -0.59
USP4-204ENST00000416417 RUFY1Q96T51 708 aa11.36□□□□□ -0.59
USP4-204ENST00000416417 HEMGNQ9BXL5 484 aa11.36□□□□□ -0.59
USP4-204ENST00000416417 ADNPQ9H2P0 1102 aa11.36□□□□□ -0.59
USP4-204ENST00000416417 SLC40A1Q9NP59 571 aa11.36□□□□□ -0.59
USP4-204ENST00000416417 RAD18Q9NS91 495 aa11.36□□□□□ -0.59
USP4-204ENST00000416417 DDX56Q9NY93 547 aaKnown RBP11.36□□□□□ -0.59
USP4-204ENST00000416417 KLHL8Q9P2G9 620 aaPredicted RBP11.36□□□□□ -0.59
USP4-204ENST00000416417 NFKBIL1Q9UBC1 381 aaPredicted RBP11.36□□□□□ -0.59
USP4-204ENST00000416417 FAM153AQ9UHL3 310 aa11.36□□□□□ -0.59
USP4-204ENST00000416417 CROTQ9UKG9 612 aa11.36□□□□□ -0.59
USP4-204ENST00000416417 LOC285095A0A1B0GVY8 99 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 OR2AG2A6NM03 316 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 DDX3YO15523 660 aaKnown RBP11.35□□□□□ -0.59
USP4-204ENST00000416417 CBFA2T2O43439 604 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 POP7O75817 140 aaKnown RBP11.35□□□□□ -0.59
USP4-204ENST00000416417 NDUFA10O95299 355 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 TIAF1O95411 115 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 ANKRD34CP0C6C1 535 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 DLSTP36957 453 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 GTF2H3Q13889 308 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 ERV3-1Q14264 604 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 NFE2L1Q14494 772 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 LRRC38Q5VT99 294 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 PDPK2PQ6A1A2 396 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 DUS1LQ6P1R4 473 aaKnown RBP11.35□□□□□ -0.59
USP4-204ENST00000416417 TMEM220Q6QAJ8 160 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 ABRAXAS1Q6UWZ7 409 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 C6orf15Q6UXA7 325 aaPredicted RBP11.35□□□□□ -0.59
USP4-204ENST00000416417 PID1Q7Z2X4 250 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 VSIG1Q86XK7 387 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 BEND7Q8N7W2 519 aaPredicted RBP11.35□□□□□ -0.59
USP4-204ENST00000416417 ABHD17AQ96GS6 310 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 VPS35Q96QK1 796 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 ZPBPQ9BS86 351 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 EPB41L1Q9H4G0 881 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 ZNF768Q9H5H4 540 aaKnown RBP11.35□□□□□ -0.59
USP4-204ENST00000416417 AKIRIN1Q9H9L7 192 aaPredicted RBP11.35□□□□□ -0.59
USP4-204ENST00000416417 UCK1Q9HA47 277 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 LNPEPQ9UIQ6 1025 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 ALG6Q9Y672 507 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 UBR5O95071 2799 aaPredicted RBP11.35□□□□□ -0.59
USP4-204ENST00000416417 IGHV5-51A0A0C4DH38 117 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 GPR89AB7ZAQ6 455 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 GAPDHSO14556 408 aaPredicted RBP11.35□□□□□ -0.59
USP4-204ENST00000416417 SPAG6O75602 509 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 AGTP01019 485 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 TPM1P09493 284 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 GPR89BP0CG08 455 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 FOLR1P15328 257 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 SPAM1P38567 509 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 SLC1A1P43005 524 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 CAPZBP47756 277 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 TFDP2Q14188 446 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 RPE65Q16518 533 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 PPP2R5EQ16537 467 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 TAZQ16635 292 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 FBXO38Q6PIJ6 1188 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 GLT6D1Q7Z4J2 308 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms