RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 OR2AG1Q9H205 316 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 MRPL46Q9H2W6 279 aaKnown RBP3.66□□□□□ -1.82
RTN4-208ENST00000404909 ZNF395Q9H8N7 513 aaPredicted RBP3.66□□□□□ -1.82
RTN4-208ENST00000404909 FBRSQ9HAH7 460 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 FZD3Q9NPG1 666 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 UTP6Q9NYH9 597 aaKnown RBP3.66□□□□□ -1.82
RTN4-208ENST00000404909 THEGQ9P2T0 379 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 MRPS17Q9Y2R5 130 aaKnown RBP3.66□□□□□ -1.82
RTN4-208ENST00000404909 TMEM98Q9Y2Y6 226 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 KANSL1LA0AUZ9 987 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 NPEPPSL1A6NEC2 478 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 ERICH4A6NGS2 130 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 G3V2L1 256 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 CDC7O00311 574 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 PLRG1O43660 514 aaKnown RBP3.66□□□□□ -1.82
RTN4-208ENST00000404909 RNGTTO60942 597 aaKnown RBP3.66□□□□□ -1.82
RTN4-208ENST00000404909 SOD1P00441 154 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 RBP1P09455 135 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 KITP10721 976 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 CD1DP15813 335 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 GABRG2P18507 467 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 RPS3P23396 243 aaKnown RBP eCLIP3.66□□□□□ -1.823e-16■■□□□ 11.6
RTN4-208ENST00000404909 ACSL1P33121 698 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 KCNC1P48547 511 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 TPMTP51580 245 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 CTSCP53634 463 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 RPS21P63220 83 aaKnown RBP3.66□□□□□ -1.82
RTN4-208ENST00000404909 PRKCQQ04759 706 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 BST1Q10588 318 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 TMEM115Q12893 351 aaPredicted RBP3.66□□□□□ -1.82
RTN4-208ENST00000404909 ILF2Q12905 390 aaKnown RBP3.66□□□□□ -1.82
RTN4-208ENST00000404909 INPP5AQ14642 412 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 TSNQ15631 228 aaKnown RBP3.66□□□□□ -1.82
RTN4-208ENST00000404909 WSCD2Q2TBF2 565 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 FBXO48Q5FWF7 155 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 LDLRAP1Q5SW96 308 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 ATG16L1Q676U5 607 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 MACC1Q6ZN28 852 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 CYP2U1Q7Z449 544 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 ISCA2Q86U28 154 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 HEATR4Q86WZ0 1026 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 TRAPPC5Q8IUR0 188 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 NKAPQ8N5F7 415 aaKnown RBP3.66□□□□□ -1.82
RTN4-208ENST00000404909 ZBTB2Q8N680 514 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 SREK1Q8WXA9 508 aaKnown RBP3.66□□□□□ -1.82
RTN4-208ENST00000404909 ELMO1Q92556 727 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 SHDQ96IW2 340 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 HHIPQ96QV1 700 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 PANX3Q96QZ0 392 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 TSSK1BQ9BXA7 367 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 SHCBP1LQ9BZQ2 653 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 CCDC134Q9H6E4 229 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 POLMQ9NP87 494 aaPredicted RBP3.66□□□□□ -1.82
RTN4-208ENST00000404909 LTB4R2Q9NPC1 389 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 MBNL1Q9NR56 388 aaKnown RBP3.66□□□□□ -1.82
RTN4-208ENST00000404909 SPATS2LQ9NUQ6 558 aaKnown RBP3.66□□□□□ -1.82
RTN4-208ENST00000404909 SMOXQ9NWM0 555 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 MARCOQ9UEW3 520 aaPredicted RBP3.66□□□□□ -1.82
RTN4-208ENST00000404909 MUTYHQ9UIF7 546 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 RNF112Q9ULX5 631 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 ZFR2Q9UPR6 939 aaKnown RBP3.66□□□□□ -1.82
RTN4-208ENST00000404909 DHRS7Q9Y394 339 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 PRKAB1Q9Y478 270 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 OR1A2Q9Y585 309 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 OAS3Q9Y6K5 1087 aaKnown RBP3.66□□□□□ -1.82
RTN4-208ENST00000404909 WDFY4Q6ZS81 3184 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 DMDP11532 3685 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 HGSO14964 777 aaPredicted RBP3.66□□□□□ -1.82
RTN4-208ENST00000404909 BIRC5O15392 142 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 AP1G1O43747 822 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 DLX3O60479 287 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 LYPLA1O75608 230 aaPredicted RBP3.66□□□□□ -1.82
RTN4-208ENST00000404909 FAM107AO95990 144 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 APOA4P06727 396 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 SBK3P0C264 359 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 GFAPP14136 432 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 DRD4P21917 467 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 CCR7P32248 378 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 SLC26A3P40879 764 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 RGS4P49798 205 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 NAGLUP54802 743 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 PPP2CBP62714 309 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 PPP2CAP67775 309 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 ZBTB16Q05516 673 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 STX3Q13277 289 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 LRRC32Q14392 662 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 GAS6Q14393 721 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 OR4D1Q15615 310 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 PLA2G4EQ3MJ16 856 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 ACSBG2Q5FVE4 666 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 CFAP157Q5JU67 520 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 PNCKQ6P2M8 343 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 TMEM220Q6QAJ8 160 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 CRTC3Q6UUV7 619 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 FRA10AC1Q70Z53 315 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 CCDC91Q7Z6B0 441 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 KBTBD6Q86V97 674 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 TRIM42Q8IWZ5 723 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 RAVER1Q8IY67 606 aaKnown RBP3.66□□□□□ -1.82
RTN4-208ENST00000404909 TMEM151AQ8N4L1 468 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms