RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 RHOXF2BP0C7M4 288 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 HNRNPA2B1P22626 353 aaKnown RBP9.11□□□□□ -0.95
VPS53-203ENST00000401468 DGKAP23743 735 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 HADHAP40939 763 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 ARCN1P48444 511 aaKnown RBP9.11□□□□□ -0.95
VPS53-203ENST00000401468 ARRB1P49407 418 aaPredicted RBP9.11□□□□□ -0.95
VPS53-203ENST00000401468 CARSP49589 748 aaKnown RBP9.11□□□□□ -0.95
VPS53-203ENST00000401468 ACADVLP49748 655 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 PLTPP55058 493 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 ARL4CP56559 192 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 PFN3P60673 137 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 TARDBPQ13148 414 aaKnown RBP eCLIP9.11□□□□□ -0.95
VPS53-203ENST00000401468 MTM1Q13496 603 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 C1orf61Q13536 156 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 SKIDA1Q1XH10 827 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 SOWAHCQ53LP3 525 aaPredicted RBP9.11□□□□□ -0.95
VPS53-203ENST00000401468 DNAJC21Q5F1R6 531 aaKnown RBP9.11□□□□□ -0.95
VPS53-203ENST00000401468 TEX35Q5T0J7 233 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 KCTD16Q68DU8 428 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 KIAA0930Q6ICG6 404 aaPredicted RBP9.11□□□□□ -0.95
VPS53-203ENST00000401468 RFLNAQ6ZTI6 216 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 CYS1Q717R9 158 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 TMPRSS7Q7RTY8 843 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 ABI3BPQ7Z7G0 1075 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 IQCHQ86VS3 1027 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 IGDCC3Q8IVU1 814 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 IFT20Q8IY31 132 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 PPHLN1Q8NEY8 458 aaKnown RBP9.11□□□□□ -0.95
VPS53-203ENST00000401468 OR4K2Q8NGD2 314 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 OR13C4Q8NGS5 318 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 NUS1Q96E22 293 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 ZNF778Q96MU6 729 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 VPS35Q96QK1 796 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 RHOXF2Q9BQY4 288 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 ZSCAN5AQ9BUG6 496 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 C1QTNF7Q9BXJ2 289 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 TXLNGYQ9BZA5 131 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 TSPYL1Q9H0U9 437 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 ABCG8Q9H221 673 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 IL26Q9NPH9 171 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 CHRAC1Q9NRG0 131 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 SMOXQ9NWM0 555 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 RAB21Q9UL25 225 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 PKP3Q9Y446 797 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 KCTD3Q9Y597 815 aa9.11□□□□□ -0.95
VPS53-203ENST00000401468 PMS2P1A4D2B8 440 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 CTIFO43310 598 aaKnown RBP9.1□□□□□ -0.95
VPS53-203ENST00000401468 RFPL3O75679 317 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 TTC4O95801 387 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 C1QAP02745 245 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 MYBL2P10244 700 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 JUPP14923 745 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 TSHRP16473 764 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 PGAM1P18669 254 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 ITPKBP27987 946 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 NMBRP28336 390 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 IGFALSP35858 605 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 SPAM1P38567 509 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 ELK3P41970 407 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 ARSDP51689 593 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 SESN2P58004 480 aaPredicted RBP9.1□□□□□ -0.95
VPS53-203ENST00000401468 CRADDP78560 199 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 DAB2P98082 770 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 PEX6Q13608 980 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 PDE1CQ14123 709 aaPredicted RBP9.1□□□□□ -0.95
VPS53-203ENST00000401468 PTPRCAPQ14761 206 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 FASTKD3Q14CZ7 662 aaKnown RBP9.1□□□□□ -0.95
VPS53-203ENST00000401468 LRRC14Q15048 493 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 ACOX1Q15067 660 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 IRF4Q15306 451 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 DBN1Q16643 649 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 DEFB133Q30KQ1 61 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 ANKRD20A4Q4UJ75 823 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 CCDC38Q502W7 563 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 PNCKQ6P2M8 343 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 ZNF449Q6P9G9 518 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 LYPD4Q6UWN0 246 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 ADAMTSL4Q6UY14 1074 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 KYAT3Q6YP21 454 aaKnown RBP9.1□□□□□ -0.95
VPS53-203ENST00000401468 CEP128Q6ZU80 1094 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 CENPUQ71F23 418 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 PELI3Q8N2H9 469 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 TRAM1L1Q8N609 369 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 SCG3Q8WXD2 468 aaKnown RBP9.1□□□□□ -0.95
VPS53-203ENST00000401468 SCAMP4Q969E2 229 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 FUBP1Q96AE4 644 aaKnown RBP9.1□□□□□ -0.95
VPS53-203ENST00000401468 SKA1Q96BD8 255 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 MFSD3Q96ES6 412 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 STAMBPL1Q96FJ0 436 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 CDKN2AIPNLQ96HQ2 116 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 NAF1Q96HR8 494 aaKnown RBP9.1□□□□□ -0.95
VPS53-203ENST00000401468 COX14Q96I36 57 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 DNAJC1Q96KC8 554 aaKnown RBP9.1□□□□□ -0.95
VPS53-203ENST00000401468 BMFQ96LC9 184 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 PWWP2AQ96N64 755 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 FMO2Q99518 471 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 TEX101Q9BY14 249 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 FUT8Q9BYC5 575 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 GRIP2Q9C0E4 1043 aa9.1□□□□□ -0.95
VPS53-203ENST00000401468 FAM83DQ9H4H8 585 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms