RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 EPHB6O15197 1021 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 PI15O43692 258 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 IGFBP5P24593 272 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 BRCC3P46736 316 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 ZNF132P52740 706 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 SRSF11Q05519 484 aaKnown RBP5.41□□□□□ -1.54
VPS13C-204ENST00000395898 ZBTB6Q15916 424 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 SLC5A9Q2M3M2 681 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 CHST15Q7LFX5 561 aaPredicted RBP5.41□□□□□ -1.54
VPS13C-204ENST00000395898 CMC1Q7Z7K0 106 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 RANBP3LQ86VV4 465 aaPredicted RBP5.41□□□□□ -1.54
VPS13C-204ENST00000395898 JAZF1Q86VZ6 243 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 SPATA6LQ8N4H0 392 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 DNASE1L2Q92874 299 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 GPER1Q99527 375 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 ACAT2Q9BWD1 397 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 BRINP2Q9C0B6 783 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 EQTNQ9NQ60 294 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 TLL2Q9Y6L7 1015 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 ZFP37Q9Y6Q3 630 aaPredicted RBP5.41□□□□□ -1.54
VPS13C-204ENST00000395898 U3KQV3 271 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 RCCD1A6NED2 376 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 DDX3YO15523 660 aaKnown RBP5.41□□□□□ -1.54
VPS13C-204ENST00000395898 TSPAN1O60635 241 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 ALPPL2P10696 532 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 VARSP26640 1264 aaKnown RBP5.41□□□□□ -1.54
VPS13C-204ENST00000395898 KCNJ2P63252 427 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 GRB14Q14449 540 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 GRIK5Q16478 980 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 TMEM44Q2T9K0 475 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 TNFAIP8L3Q5GJ75 292 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 RBM44Q6ZP01 1051 aaKnown RBP5.41□□□□□ -1.54
VPS13C-204ENST00000395898 OR10H5Q8NGA6 315 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 PSMA8Q8TAA3 256 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 AGAP2Q99490 1192 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 RSPH9Q9H1X1 276 aaPredicted RBP5.41□□□□□ -1.54
VPS13C-204ENST00000395898 SSU72Q9NP77 194 aaKnown RBP5.41□□□□□ -1.54
VPS13C-204ENST00000395898 ABCB10Q9NRK6 738 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 THUMPD1Q9NXG2 353 aaKnown RBP5.41□□□□□ -1.54
VPS13C-204ENST00000395898 CDH22Q9UJ99 828 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 TLR6Q9Y2C9 796 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 MRPS17Q9Y2R5 130 aaKnown RBP5.41□□□□□ -1.54
VPS13C-204ENST00000395898 RGPD2P0DJD1 1756 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 BTN3A3O00478 584 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 ESR1P03372 595 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 MPIP34949 423 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 CCNFP41002 786 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 VBP1P61758 197 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 DPY19L1Q2PZI1 675 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 DDI2Q5TDH0 399 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 FAM91A1Q658Y4 838 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 KCTD13Q8WZ19 329 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 ACDQ96AP0 544 aa5.41□□□□□ -1.54
VPS13C-204ENST00000395898 HNRNPABQ99729 332 aaKnown RBP5.41□□□□□ -1.54
VPS13C-204ENST00000395898 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP5.41□□□□□ -1.54
VPS13C-204ENST00000395898 PRR5-ARHGAP8B1AHC4 643 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 SLC30A4O14863 429 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 RGS10O43665 173 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 SIN3BO75182 1162 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 BANF1O75531 89 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 RGS8P57771 180 aaPredicted RBP5.4□□□□□ -1.54
VPS13C-204ENST00000395898 ARHGAP8P85298 464 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 CLCQ05315 142 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 FUT2Q10981 343 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 SNAPC1Q16533 368 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 PACS2Q86VP3 889 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 PNPT1Q8TCS8 783 aaKnown RBP5.4□□□□□ -1.54
VPS13C-204ENST00000395898 RAB11FIP5Q9BXF6 653 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 FAM83DQ9H4H8 585 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 ZNF222Q9UK12 451 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 PCDHGB7Q9Y5F8 929 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 PRODHO43272 600 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 MFSD11O43934 449 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 RSL1D1O76021 490 aaKnown RBP5.4□□□□□ -1.54
VPS13C-204ENST00000395898 IFNA6P05013 189 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 GIMD1P0DJR0 217 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 CD247P20963 164 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 NT5EP21589 574 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 ROR2Q01974 943 aaKnown RBP5.4□□□□□ -1.54
VPS13C-204ENST00000395898 VARS2Q5ST30 1063 aaKnown RBP5.4□□□□□ -1.54
VPS13C-204ENST00000395898 DENND5AQ6IQ26 1287 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 SCIMPQ6UWF3 145 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 ZZZ3Q8IYH5 903 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 SVOPLQ8N434 492 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 TRNT1Q96Q11 434 aaKnown RBP5.4□□□□□ -1.54
VPS13C-204ENST00000395898 NID2Q14112 1375 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 A0A1W2PPM1 405 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 ARHGEF33A8MVX0 844 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 TNFRSF21O75509 655 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 CYB5AP00167 134 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 TACR2P21452 398 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 DDX6P26196 483 aaKnown RBP eCLIP5.4□□□□□ -1.54
VPS13C-204ENST00000395898 SDC2P34741 201 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 PBX1P40424 430 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 FSTL4Q6MZW2 842 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 ATCAYQ86WG3 371 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 C1orf127Q8N9H9 656 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 OR14C36Q8NHC7 312 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 NEK7Q8TDX7 302 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 AZIN2Q96A70 460 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms