RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 ITGA2BP08514 1039 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 AGTR1P30556 359 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 ZNF81P51508 661 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 ATP6V0D1P61421 351 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 CPSF1Q10570 1443 aaKnown RBP13.31□□□□□ -0.28
USP49-203ENST00000394253 TSGA10IPQ3SY00 556 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 GPR156Q8NFN8 814 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 CIB1Q99828 191 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 SLC30A2Q9BRI3 323 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 C2orf49Q9BVC5 232 aaPredicted RBP13.31□□□□□ -0.28
USP49-203ENST00000394253 ZNF334Q9HCZ1 680 aaPredicted RBP13.31□□□□□ -0.28
USP49-203ENST00000394253 ERVK-5Q9HDB9 667 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 USP21Q9UK80 565 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 WASF2Q9Y6W5 498 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 CDK5RAP2Q96SN8 1893 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 CDH13P55290 713 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 FAM131BQ86XD5 332 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 SULT4A1Q9BR01 284 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 UXTQ9UBK9 157 aaPredicted RBP13.3□□□□□ -0.28
USP49-203ENST00000394253 ZNF823P16415 610 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 CTBP2P56545 445 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 RRP1BQ14684 758 aaKnown RBP13.3□□□□□ -0.28
USP49-203ENST00000394253 RXFP2Q8WXD0 754 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 UPF1Q92900 1129 aaKnown RBP eCLIP13.3□□□□□ -0.288e-6■■□□□ 12.8
USP49-203ENST00000394253 SMARCD2Q92925 531 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 PTPRTO14522 1441 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 ELOVL7A1L3X0 281 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 TMEM62Q0P6H9 643 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 RIOX2Q8IUF8 465 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 DPPA5A6NC42 116 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 FFAR3O14843 346 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 GPR42O15529 346 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 NME6O75414 186 aaPredicted RBP13.3□□□□□ -0.28
USP49-203ENST00000394253 RAB5CP51148 216 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 FAAP100Q0VG06 881 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 METTL21CQ5VZV1 264 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 FOXRED2Q8IWF2 684 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 GFOD1Q9NXC2 390 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 ENDOD1O94919 500 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 RAB36O95755 333 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 DNAJA1P31689 397 aaKnown RBP13.3□□□□□ -0.28
USP49-203ENST00000394253 MERTKQ12866 999 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 CNPY1Q3B7I2 92 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 GCNT6Q5T4J0 391 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 CHCHD4Q8N4Q1 142 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 RCN3Q96D15 328 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 C5orf34Q96MH7 638 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 RAD9AQ99638 391 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 BLOC1S4Q9NUP1 217 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 TMEM45AQ9NWC5 275 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 CDH22Q9UJ99 828 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 WEE1P30291 646 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 RAB39AQ14964 217 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 ZNF578Q96N58 590 aaPredicted RBP13.3□□□□□ -0.28
USP49-203ENST00000394253 ATP13A3Q9H7F0 1226 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 CISHQ9NSE2 258 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 GNB3P16520 340 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 AMD1P17707 334 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 TUBP50607 506 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 NFE2L1Q14494 772 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 C12orf45Q8N5I9 185 aaPredicted RBP13.3□□□□□ -0.28
USP49-203ENST00000394253 TTLL6Q8N841 843 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 SLC41A3Q96GZ6 507 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 RHBGQ9H310 441 aa13.3□□□□□ -0.28
USP49-203ENST00000394253 C13orf42A0A1B0GVH6 325 aa13.29□□□□□ -0.28
USP49-203ENST00000394253 ILVBLA1L0T0 632 aa13.29□□□□□ -0.28
USP49-203ENST00000394253 CPSF4LA6NMK7 179 aaKnown RBP13.29□□□□□ -0.28
USP49-203ENST00000394253 SLC34A2O95436 690 aa13.29□□□□□ -0.28
USP49-203ENST00000394253 ACVR2AP27037 513 aa13.29□□□□□ -0.28
USP49-203ENST00000394253 DCDC5Q6ZRR9 648 aa13.29□□□□□ -0.28
USP49-203ENST00000394253 COQ8AQ8NI60 647 aa13.29□□□□□ -0.28
USP49-203ENST00000394253 DPF1Q92782 380 aa13.29□□□□□ -0.28
USP49-203ENST00000394253 KCNN1Q92952 543 aa13.29□□□□□ -0.28
USP49-203ENST00000394253 A0A0J9YYE9 177 aa13.29□□□□□ -0.28
USP49-203ENST00000394253 AGAP5A6NIR3 686 aa13.29□□□□□ -0.28
USP49-203ENST00000394253 SLC3A1Q07837 685 aa13.29□□□□□ -0.28
USP49-203ENST00000394253 IQCCQ4KMZ1 466 aa13.29□□□□□ -0.28
USP49-203ENST00000394253 RAP1GAP2Q684P5 730 aa13.29□□□□□ -0.28
USP49-203ENST00000394253 GET4Q7L5D6 327 aaPredicted RBP13.29□□□□□ -0.28
USP49-203ENST00000394253 PCSK9Q8NBP7 692 aaKnown RBP13.29□□□□□ -0.28
USP49-203ENST00000394253 BORCS8Q96FH0 119 aa13.29□□□□□ -0.28
USP49-203ENST00000394253 SLC5A7Q9GZV3 580 aa13.29□□□□□ -0.28
USP49-203ENST00000394253 DUSP10Q9Y6W6 482 aa13.29□□□□□ -0.28
USP49-203ENST00000394253 HMGXB3Q12766 1538 aa13.29□□□□□ -0.28
USP49-203ENST00000394253 ACOX3O15254 700 aa13.29□□□□□ -0.28
USP49-203ENST00000394253 POLR2JP52435 117 aaKnown RBP13.29□□□□□ -0.28
USP49-203ENST00000394253 LIMK2P53671 638 aa13.29□□□□□ -0.28
USP49-203ENST00000394253 NCS1P62166 190 aa13.29□□□□□ -0.28
USP49-203ENST00000394253 MASTLQ96GX5 879 aa13.29□□□□□ -0.28
USP49-203ENST00000394253 MRPL9Q9BYD2 267 aaKnown RBP13.29□□□□□ -0.28
USP49-203ENST00000394253 RPL36Q9Y3U8 105 aaKnown RBP13.29□□□□□ -0.28
USP49-203ENST00000394253 CTSHP09668 335 aa13.29□□□□□ -0.28
USP49-203ENST00000394253 HTR1BP28222 390 aa13.29□□□□□ -0.28
USP49-203ENST00000394253 SNRPD1P62314 119 aaKnown RBP13.29□□□□□ -0.28
USP49-203ENST00000394253 ALG1LQ6GMV1 187 aa13.29□□□□□ -0.28
USP49-203ENST00000394253 C1orf94Q6P1W5 598 aa13.29□□□□□ -0.28
USP49-203ENST00000394253 RD3Q7Z3Z2 195 aa13.29□□□□□ -0.28
USP49-203ENST00000394253 KLHL36Q8N4N3 616 aa13.29□□□□□ -0.28
USP49-203ENST00000394253 CPSF7Q8N684 471 aaKnown RBP13.29□□□□□ -0.28
USP49-203ENST00000394253 MFSD2AQ8NA29 543 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms