RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 PRR11Q96HE9 360 aaPredicted RBP17.99■□□□□ 0.47
CCDC88C-203ENST00000389856 RSPH9Q9H1X1 276 aaPredicted RBP17.99■□□□□ 0.47
CCDC88C-203ENST00000389856 NCKIPSDQ9NZQ3 722 aa17.99■□□□□ 0.47
CCDC88C-203ENST00000389856 ARMCX1Q9P291 453 aa17.99■□□□□ 0.47
CCDC88C-203ENST00000389856 STOML1Q9UBI4 398 aa17.99■□□□□ 0.47
CCDC88C-203ENST00000389856 SARDHQ9UL12 918 aa17.99■□□□□ 0.47
CCDC88C-203ENST00000389856 DHRS7Q9Y394 339 aa17.99■□□□□ 0.47
CCDC88C-203ENST00000389856 TARM1B6A8C7 271 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 NIPSNAP2O75323 286 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 LYPLA1O75608 230 aaPredicted RBP17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 CIB2O75838 187 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 AP2A2O94973 939 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 UGT1A6P19224 532 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 C5AR1P21730 350 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 UGT1A1P22309 533 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 UGT1A4P22310 534 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 NTSR1P30989 418 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 UGT1A3P35503 534 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 UGT1A5P35504 534 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 SOX9P48436 509 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 ALDH18A1P54886 795 aaKnown RBP17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 TRMT5Q32P41 509 aaKnown RBP17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 ATP13A5Q4VNC0 1218 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 LDLRAP1Q5SW96 308 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 ZNF776Q68DI1 518 aaPredicted RBP17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 PAQR3Q6TCH7 311 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 PIWIL4Q7Z3Z4 852 aaKnown RBP17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 PNPLA1Q8N8W4 532 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 CXorf40AQ8TE69 158 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 CMTM5Q96DZ9 223 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 VPS35Q96QK1 796 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 ILKAPQ9H0C8 392 aaPredicted RBP17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 VTI1BQ9UEU0 232 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 PIAS3Q9Y6X2 628 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 PLXNA2O75051 1894 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 ZNF195O14628 629 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 AREL1O15033 823 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 KPNA5O15131 536 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 SLC22A2O15244 555 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 TM7SF2O76062 418 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 DGKAP23743 735 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 AKT1P31749 480 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 GMPRP36959 345 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 ZRSR2Q15696 482 aaKnown RBP17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 CFAP157Q5JU67 520 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 TECPR1Q7Z6L1 1165 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 SFTPA1Q8IWL2 248 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 CD200R1Q8TD46 325 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 ANKRD49Q8WVL7 239 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 STMN2Q93045 179 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 KIAA1191Q96A73 305 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 AP2M1Q96CW1 435 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 PDLIM5Q96HC4 596 aaKnown RBP17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 EBF4Q9BQW3 602 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 DRC3Q9H069 523 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 KCNK12Q9HB15 430 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 SPATS2LQ9NUQ6 558 aaKnown RBP17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 RAP2CQ9Y3L5 183 aa17.98■□□□□ 0.47
CCDC88C-203ENST00000389856 IGLV3-16A0A075B6K0 115 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 K7EQS6 105 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 EIF3FO00303 357 aaPredicted RBP17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 LZTS3O60299 673 aaPredicted RBP17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 NPHS1O60500 1241 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 DIAPH2O60879 1101 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 KERAO60938 352 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 GM2AP17900 193 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 MSH3P20585 1137 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 ETV3P41162 512 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 KIR2DL1P43626 348 aaPredicted RBP17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 MRPS21P82921 87 aaKnown RBP17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 TIAL1Q01085 375 aaKnown RBP eCLIP17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 PRKAA1Q13131 559 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 CST6Q15828 149 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 SETMARQ53H47 684 aaPredicted RBP17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 HENMT1Q5T8I9 393 aaKnown RBP17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 EPGNQ6UW88 154 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 TMEM207Q6UWW9 146 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 Q6ZVL8 140 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 ISCA2Q86U28 154 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 NLRP8Q86W28 1048 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 SPATA6LQ8N4H0 392 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 TMEM151AQ8N4L1 468 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 SLC44A3Q8N4M1 653 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 OR2T3Q8NH03 318 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 DTD2Q96FN9 168 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 FAM161BQ96MY7 647 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 ACOX2Q99424 681 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 ZCCHC2Q9C0B9 1178 aaKnown RBP17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 ALG9Q9H6U8 611 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 YY1AP1Q9H869 796 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 SARS2Q9NP81 518 aaKnown RBP17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 BATF3Q9NR55 127 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 MRGBPQ9NV56 204 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 PNPOQ9NVS9 261 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 MED16Q9Y2X0 877 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 LRRC42Q9Y546 428 aa17.97■□□□□ 0.47
CCDC88C-203ENST00000389856 CKAP5Q14008 2032 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 PRR5-ARHGAP8B1AHC4 643 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 TSPAN6O43657 245 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms