RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 C19orf60Q96EN9 201 aa24.88■■□□□ 1.57
SHOX2-201ENST00000389589 FAM161BQ96MY7 647 aa24.88■■□□□ 1.57
SHOX2-201ENST00000389589 EBF3Q9H4W6 596 aa24.88■■□□□ 1.57
SHOX2-201ENST00000389589 PCTPQ9UKL6 214 aa24.88■■□□□ 1.57
SHOX2-201ENST00000389589 HEPACAM2A8MVW5 462 aa24.87■■□□□ 1.57
SHOX2-201ENST00000389589 S100BP04271 92 aaPredicted RBP24.87■■□□□ 1.57
SHOX2-201ENST00000389589 CTSLP07711 333 aa24.87■■□□□ 1.57
SHOX2-201ENST00000389589 XPAP23025 273 aaPredicted RBP24.87■■□□□ 1.57
SHOX2-201ENST00000389589 SLC25A3Q00325 362 aa24.87■■□□□ 1.57
SHOX2-201ENST00000389589 CUL3Q13618 768 aa24.87■■□□□ 1.57
SHOX2-201ENST00000389589 CYLC2Q14093 348 aaPredicted RBP24.87■■□□□ 1.57
SHOX2-201ENST00000389589 PDGFRLQ15198 375 aa24.87■■□□□ 1.57
SHOX2-201ENST00000389589 ULK2Q8IYT8 1036 aa24.87■■□□□ 1.57
SHOX2-201ENST00000389589 PPP2R3CQ969Q6 453 aa24.87■■□□□ 1.57
SHOX2-201ENST00000389589 FAM126AQ9BYI3 521 aaPredicted RBP24.87■■□□□ 1.57
SHOX2-201ENST00000389589 PBX4Q9BYU1 374 aa24.87■■□□□ 1.57
SHOX2-201ENST00000389589 PCDH12Q9NPG4 1184 aa24.87■■□□□ 1.57
SHOX2-201ENST00000389589 DEC1Q9P2X7 70 aa24.87■■□□□ 1.57
SHOX2-201ENST00000389589 TNPO3Q9Y5L0 923 aaKnown RBP24.87■■□□□ 1.57
SHOX2-201ENST00000389589 SEC23IPQ9Y6Y8 1000 aaKnown RBP24.87■■□□□ 1.57
SHOX2-201ENST00000389589 KIAA1549LQ6ZVL6 1849 aa24.87■■□□□ 1.57
SHOX2-201ENST00000389589 UBDO15205 165 aa24.87■■□□□ 1.57
SHOX2-201ENST00000389589 GPC4O75487 556 aa24.87■■□□□ 1.57
SHOX2-201ENST00000389589 CIB2O75838 187 aa24.87■■□□□ 1.57
SHOX2-201ENST00000389589 CBSLP0DN79 551 aa24.87■■□□□ 1.57
SHOX2-201ENST00000389589 CBSP35520 551 aa24.87■■□□□ 1.57
SHOX2-201ENST00000389589 C6orf163Q5TEZ5 329 aa24.87■■□□□ 1.57
SHOX2-201ENST00000389589 PPP2R2DQ66LE6 453 aa24.87■■□□□ 1.57
SHOX2-201ENST00000389589 SBSNQ6UWP8 590 aa24.87■■□□□ 1.57
SHOX2-201ENST00000389589 RFLNAQ6ZTI6 216 aa24.87■■□□□ 1.57
SHOX2-201ENST00000389589 NKX2-4Q9H2Z4 354 aa24.87■■□□□ 1.57
SHOX2-201ENST00000389589 SEMA4BQ9NPR2 832 aaPredicted RBP24.87■■□□□ 1.57
SHOX2-201ENST00000389589 SMOXQ9NWM0 555 aa24.87■■□□□ 1.57
SHOX2-201ENST00000389589 KCTD5Q9NXV2 234 aa24.87■■□□□ 1.57
SHOX2-201ENST00000389589 NFKBIL1Q9UBC1 381 aaPredicted RBP24.87■■□□□ 1.57
SHOX2-201ENST00000389589 MSRAQ9UJ68 235 aa24.87■■□□□ 1.57
SHOX2-201ENST00000389589 DNAJC15Q9Y5T4 150 aa24.87■■□□□ 1.57
SHOX2-201ENST00000389589 RAD51BO15315 384 aa24.86■■□□□ 1.57
SHOX2-201ENST00000389589 PEX11AO75192 247 aa24.86■■□□□ 1.57
SHOX2-201ENST00000389589 CDC16Q13042 620 aa24.86■■□□□ 1.57
SHOX2-201ENST00000389589 SQLEQ14534 574 aa24.86■■□□□ 1.57
SHOX2-201ENST00000389589 GET4Q7L5D6 327 aaPredicted RBP24.86■■□□□ 1.57
SHOX2-201ENST00000389589 NET1Q7Z628 596 aaPredicted RBP24.86■■□□□ 1.57
SHOX2-201ENST00000389589 GPR149Q86SP6 731 aa24.86■■□□□ 1.57
SHOX2-201ENST00000389589 SNX32Q86XE0 403 aa24.86■■□□□ 1.57
SHOX2-201ENST00000389589 OR56A4Q8NGH8 313 aa24.86■■□□□ 1.57
SHOX2-201ENST00000389589 FAM83CQ9BQN1 747 aa24.86■■□□□ 1.57
SHOX2-201ENST00000389589 FAM83DQ9H4H8 585 aa24.86■■□□□ 1.57
SHOX2-201ENST00000389589 RNPEPL1Q9HAU8 725 aa24.86■■□□□ 1.57
SHOX2-201ENST00000389589 PPP6CO00743 305 aa24.85■■□□□ 1.57
SHOX2-201ENST00000389589 OR56A5P0C7T3 313 aa24.85■■□□□ 1.57
SHOX2-201ENST00000389589 GM2AP17900 193 aa24.85■■□□□ 1.57
SHOX2-201ENST00000389589 EIF4HQ15056 248 aaKnown RBP24.85■■□□□ 1.57
SHOX2-201ENST00000389589 LARP4Q71RC2 724 aaKnown RBP eCLIP24.85■■□□□ 1.57
SHOX2-201ENST00000389589 DPPA4Q7L190 304 aa24.85■■□□□ 1.57
SHOX2-201ENST00000389589 EFL1Q7Z2Z2 1120 aaKnown RBP24.85■■□□□ 1.57
SHOX2-201ENST00000389589 TWIST2Q8WVJ9 160 aa24.85■■□□□ 1.57
SHOX2-201ENST00000389589 ZFYVE19Q96K21 471 aa24.85■■□□□ 1.57
SHOX2-201ENST00000389589 SPATA16Q9BXB7 569 aa24.85■■□□□ 1.57
SHOX2-201ENST00000389589 CD248Q9HCU0 757 aa24.85■■□□□ 1.57
SHOX2-201ENST00000389589 TRANK1O15050 2925 aa24.85■■□□□ 1.57
SHOX2-201ENST00000389589 EIF3FO00303 357 aaPredicted RBP24.85■■□□□ 1.57
SHOX2-201ENST00000389589 ENTPD5O75356 428 aa24.85■■□□□ 1.57
SHOX2-201ENST00000389589 AGTR2P50052 363 aa24.85■■□□□ 1.57
SHOX2-201ENST00000389589 RAB30Q15771 203 aa24.85■■□□□ 1.57
SHOX2-201ENST00000389589 ACSBG2Q5FVE4 666 aa24.85■■□□□ 1.57
SHOX2-201ENST00000389589 HGH1Q9BTY7 390 aa24.85■■□□□ 1.57
SHOX2-201ENST00000389589 NUSAP1Q9BXS6 441 aaKnown RBP24.85■■□□□ 1.57
SHOX2-201ENST00000389589 MTG2Q9H4K7 406 aa24.85■■□□□ 1.57
SHOX2-201ENST00000389589 OARD1Q9Y530 152 aa24.85■■□□□ 1.57
SHOX2-201ENST00000389589 HSFX4A0A1B0GTS1 333 aaPredicted RBP24.84■■□□□ 1.57
SHOX2-201ENST00000389589 HSFX3A0A1B0GWH4 333 aaPredicted RBP24.84■■□□□ 1.57
SHOX2-201ENST00000389589 C16orf96A6NNT2 1141 aa24.84■■□□□ 1.57
SHOX2-201ENST00000389589 GIPC1O14908 333 aa24.84■■□□□ 1.57
SHOX2-201ENST00000389589 CRCPO75575 148 aa24.84■■□□□ 1.57
SHOX2-201ENST00000389589 ESRRBO95718 433 aa24.84■■□□□ 1.57
SHOX2-201ENST00000389589 ITGAXP20702 1163 aa24.84■■□□□ 1.57
SHOX2-201ENST00000389589 KPNB1Q14974 876 aaKnown RBP24.84■■□□□ 1.57
SHOX2-201ENST00000389589 PCBP2Q15366 365 aaKnown RBP eCLIP24.84■■□□□ 1.57
SHOX2-201ENST00000389589 GAB4Q2WGN9 574 aa24.84■■□□□ 1.57
SHOX2-201ENST00000389589 TRMT5Q32P41 509 aaKnown RBP24.84■■□□□ 1.57
SHOX2-201ENST00000389589 CYHR1Q6ZMK1 362 aa24.84■■□□□ 1.57
SHOX2-201ENST00000389589 HSD11B1LQ7Z5J1 315 aa24.84■■□□□ 1.57
SHOX2-201ENST00000389589 PDPRQ8NCN5 879 aa24.84■■□□□ 1.57
SHOX2-201ENST00000389589 MARK4Q96L34 752 aa24.84■■□□□ 1.57
SHOX2-201ENST00000389589 DCLRE1BQ9H816 532 aa24.84■■□□□ 1.57
SHOX2-201ENST00000389589 UTP6Q9NYH9 597 aaKnown RBP24.84■■□□□ 1.57
SHOX2-201ENST00000389589 MUC22E2RYF6 1773 aaPredicted RBP24.84■■□□□ 1.57
SHOX2-201ENST00000389589 A0A088AWK7 358 aa24.84■■□□□ 1.57
SHOX2-201ENST00000389589 E2F3O00716 465 aa24.84■■□□□ 1.57
SHOX2-201ENST00000389589 PRNPP04156 253 aa24.84■■□□□ 1.57
SHOX2-201ENST00000389589 SLC6A11P48066 632 aa24.84■■□□□ 1.57
SHOX2-201ENST00000389589 ATP4BP51164 291 aa24.84■■□□□ 1.57
SHOX2-201ENST00000389589 B4GALNT1Q00973 533 aa24.84■■□□□ 1.57
SHOX2-201ENST00000389589 PPP1R3AQ16821 1122 aa24.84■■□□□ 1.57
SHOX2-201ENST00000389589 ERAP2Q6P179 960 aa24.84■■□□□ 1.57
SHOX2-201ENST00000389589 ENDOVQ8N8Q3 282 aaKnown RBP24.84■■□□□ 1.57
SHOX2-201ENST00000389589 NAT14Q8WUY8 206 aa24.84■■□□□ 1.57
SHOX2-201ENST00000389589 NXPE3Q969Y0 559 aa24.84■■□□□ 1.57
SHOX2-201ENST00000389589 CD84Q9UIB8 345 aa24.84■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms