RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 GLB1P16278 677 aa13.15□□□□□ -0.3
VPS28-202ENST00000377348 RPL10P27635 214 aaKnown RBP13.15□□□□□ -0.3
VPS28-202ENST00000377348 DRG2P55039 364 aaKnown RBP13.15□□□□□ -0.3
VPS28-202ENST00000377348 PRAMEP78395 509 aa13.15□□□□□ -0.3
VPS28-202ENST00000377348 SHC2P98077 582 aa13.15□□□□□ -0.3
VPS28-202ENST00000377348 E2F1Q01094 437 aa13.15□□□□□ -0.3
VPS28-202ENST00000377348 FOXK2Q01167 660 aa13.15□□□□□ -0.3
VPS28-202ENST00000377348 SEMA3AQ14563 771 aa13.15□□□□□ -0.3
VPS28-202ENST00000377348 IZUMO3Q5VZ72 239 aa13.15□□□□□ -0.3
VPS28-202ENST00000377348 CASC4Q6P4E1 433 aa13.15□□□□□ -0.3
VPS28-202ENST00000377348 AFTPHQ6ULP2 937 aa13.15□□□□□ -0.3
VPS28-202ENST00000377348 FAM83HQ6ZRV2 1179 aaPredicted RBP13.15□□□□□ -0.3
VPS28-202ENST00000377348 NLRP9Q7RTR0 991 aa13.15□□□□□ -0.3
VPS28-202ENST00000377348 LDB1Q86U70 411 aaPredicted RBP13.15□□□□□ -0.3
VPS28-202ENST00000377348 AGGF1Q8N302 714 aaeCLIP13.15□□□□□ -0.3
VPS28-202ENST00000377348 CLDN19Q8N6F1 224 aa13.15□□□□□ -0.3
VPS28-202ENST00000377348 OR4L1Q8NH43 312 aa13.15□□□□□ -0.3
VPS28-202ENST00000377348 ZNF592Q92610 1267 aa13.15□□□□□ -0.3
VPS28-202ENST00000377348 MFSD3Q96ES6 412 aa13.15□□□□□ -0.3
VPS28-202ENST00000377348 RUNDC3BQ96NL0 473 aa13.15□□□□□ -0.3
VPS28-202ENST00000377348 KIFC1Q9BW19 673 aa13.15□□□□□ -0.3
VPS28-202ENST00000377348 TRIM31Q9BZY9 425 aa13.15□□□□□ -0.3
VPS28-202ENST00000377348 ABCG4Q9H172 646 aa13.15□□□□□ -0.3
VPS28-202ENST00000377348 SYNDIG1Q9H7V2 258 aa13.15□□□□□ -0.3
VPS28-202ENST00000377348 XAB2Q9HCS7 855 aaKnown RBP13.15□□□□□ -0.3
VPS28-202ENST00000377348 TREX1Q9NSU2 369 aa13.15□□□□□ -0.3
VPS28-202ENST00000377348 SOX13Q9UN79 622 aa13.15□□□□□ -0.3
VPS28-202ENST00000377348 PRSS21Q9Y6M0 314 aa13.15□□□□□ -0.3
VPS28-202ENST00000377348 IGLV3-16A0A075B6K0 115 aa13.14□□□□□ -0.31
VPS28-202ENST00000377348 CFAP99D6REC4 459 aa13.14□□□□□ -0.31
VPS28-202ENST00000377348 NUDT21O43809 227 aaKnown RBP13.14□□□□□ -0.31
VPS28-202ENST00000377348 MT-CO3P00414 261 aa13.14□□□□□ -0.31
VPS28-202ENST00000377348 RALBP11234 206 aa13.14□□□□□ -0.31
VPS28-202ENST00000377348 CDK4P11802 303 aa13.14□□□□□ -0.31
VPS28-202ENST00000377348 MLNP12872 115 aa13.14□□□□□ -0.31
VPS28-202ENST00000377348 F3P13726 295 aa13.14□□□□□ -0.31
VPS28-202ENST00000377348 ATP1B2P14415 290 aaPredicted RBP13.14□□□□□ -0.31
VPS28-202ENST00000377348 JUPP14923 745 aa13.14□□□□□ -0.31
VPS28-202ENST00000377348 MAGEA3P43357 314 aa13.14□□□□□ -0.31
VPS28-202ENST00000377348 CLCNKAP51800 687 aa13.14□□□□□ -0.31
VPS28-202ENST00000377348 CCL7P80098 99 aa13.14□□□□□ -0.31
VPS28-202ENST00000377348 BIRC2Q13490 618 aa13.14□□□□□ -0.31
VPS28-202ENST00000377348 DHX34Q14147 1143 aaKnown RBP13.14□□□□□ -0.31
VPS28-202ENST00000377348 NFE2L1Q14494 772 aa13.14□□□□□ -0.31
VPS28-202ENST00000377348 BCL7AQ4VC05 210 aa13.14□□□□□ -0.31
VPS28-202ENST00000377348 IYDQ6PHW0 289 aa13.14□□□□□ -0.31
VPS28-202ENST00000377348 XKR5Q6UX68 686 aa13.14□□□□□ -0.31
VPS28-202ENST00000377348 SYDE1Q6ZW31 735 aaPredicted RBP13.14□□□□□ -0.31
VPS28-202ENST00000377348 AMZ2Q86W34 360 aa13.14□□□□□ -0.31
VPS28-202ENST00000377348 TMPRSS12Q86WS5 348 aa13.14□□□□□ -0.31
VPS28-202ENST00000377348 ZNF761Q86XN6 746 aaPredicted RBP13.14□□□□□ -0.31
VPS28-202ENST00000377348 GALNT15Q8N3T1 639 aa13.14□□□□□ -0.31
VPS28-202ENST00000377348 SFRP1Q8N474 314 aa13.14□□□□□ -0.31
VPS28-202ENST00000377348 LILRA3Q8N6C8 439 aaPredicted RBP13.14□□□□□ -0.31
VPS28-202ENST00000377348 PEX13Q92968 403 aa13.14□□□□□ -0.31
VPS28-202ENST00000377348 ZNF514Q96K75 400 aaPredicted RBP13.14□□□□□ -0.31
VPS28-202ENST00000377348 PWWP2AQ96N64 755 aa13.14□□□□□ -0.31
VPS28-202ENST00000377348 MRM3Q9HC36 420 aaKnown RBP13.14□□□□□ -0.31
VPS28-202ENST00000377348 MARCH4Q9P2E8 410 aaPredicted RBP13.14□□□□□ -0.31
VPS28-202ENST00000377348 WDR37Q9Y2I8 494 aa13.14□□□□□ -0.31
VPS28-202ENST00000377348 ZFC3H1O60293 1989 aaKnown RBP13.14□□□□□ -0.31
VPS28-202ENST00000377348 FREM2Q5SZK8 3169 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 PTPRBP23467 1997 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 PRAMEF33A0A0G2JMD5 474 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 A0A1W2PQM1 296 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 SDR42E2A6NKP2 422 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 RHPN2P1A8MT19 583 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 PDZK1P1A8MUH7 402 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 GOLGA8KD6RF30 607 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 GOLGA8TH3BQL2 631 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 OR1I1O60431 355 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 BANF1O75531 89 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 URI1O94763 535 aaPredicted RBP13.13□□□□□ -0.31
VPS28-202ENST00000377348 RPLP0P05388 317 aaKnown RBP13.13□□□□□ -0.31
VPS28-202ENST00000377348 BRAFP15056 766 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 VCLP18206 1134 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 IDSP22304 550 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 ARNTP27540 789 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 PRLHRP49683 370 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 OR1D5P58170 312 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 TARDBPQ13148 414 aaKnown RBP eCLIP13.13□□□□□ -0.31
VPS28-202ENST00000377348 FASTKD1Q53R41 847 aaKnown RBP13.13□□□□□ -0.31
VPS28-202ENST00000377348 CDCP2Q5VXM1 449 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 CCNI2Q6ZMN8 369 aaPredicted RBP13.13□□□□□ -0.31
VPS28-202ENST00000377348 SPRED1Q7Z699 444 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 OR6C4Q8NGE1 309 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 HEXDCQ8WVB3 486 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.13□□□□□ -0.31
VPS28-202ENST00000377348 FCRL3Q96P31 734 aaPredicted RBP13.13□□□□□ -0.31
VPS28-202ENST00000377348 CATSPERZQ9NTU4 200 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 IL1RAPL1Q9NZN1 696 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 CDC23Q9UJX2 597 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 ATXN7L1Q9ULK2 861 aaPredicted RBP13.13□□□□□ -0.31
VPS28-202ENST00000377348 PSMD13Q9UNM6 376 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 CLCA2Q9UQC9 943 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 NEUROG3Q9Y4Z2 214 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 MAD1L1Q9Y6D9 718 aa13.13□□□□□ -0.31
VPS28-202ENST00000377348 DNMT3AQ9Y6K1 912 aaPredicted RBP13.13□□□□□ -0.31
VPS28-202ENST00000377348 TPRP12270 2363 aaKnown RBP13.12□□□□□ -0.31
VPS28-202ENST00000377348 FAM221BA6H8Z2 402 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms