RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 SLC9A9Q8IVB4 645 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 LGR4Q9BXB1 951 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 PCDH10Q9P2E7 1040 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 TACSTD2P09758 323 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 DCDC5Q6ZRR9 648 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 ANKS1BQ7Z6G8 1248 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 RPLP0P6Q8NHW5 317 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 ZNF317Q96PQ6 595 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-203ENST00000353578 PPP4R1LQ9P1A2 415 aa12.51□□□□□ -0.41
COL6A3-203ENST00000353578 MAP1BP46821 2468 aaKnown RBP12.51□□□□□ -0.41
COL6A3-203ENST00000353578 H0Y858 1186 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 AKAP3O75969 853 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 CCNB2O95067 398 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 MGAT1P26572 445 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 ZNF143P52747 638 aaPredicted RBP12.5□□□□□ -0.41
COL6A3-203ENST00000353578 PLD1Q13393 1074 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 COLEC12Q5KU26 742 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 OGFRL1Q5TC84 451 aaPredicted RBP12.5□□□□□ -0.41
COL6A3-203ENST00000353578 GDPGP1Q6ZNW5 385 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 CUZD1Q86UP6 607 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 CALML5Q9NZT1 146 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 SLC7A8Q9UHI5 535 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 NME7Q9Y5B8 376 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 LMO7Q8WWI1 1683 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 SGPL1O95470 568 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 CYP4B1P13584 511 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 TNNI3P19429 210 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 SLC26A2P50443 739 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 PPP5CP53041 499 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 LCP2Q13094 533 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 DDX39BQ13838 428 aaKnown RBP12.5□□□□□ -0.41
COL6A3-203ENST00000353578 TICAM1Q8IUC6 712 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 KDM1BQ8NB78 822 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 CLP1Q92989 425 aaKnown RBP12.5□□□□□ -0.41
COL6A3-203ENST00000353578 HDAC10Q969S8 669 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 PI4K2AQ9BTU6 479 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 MOCS2O96007 188 aaPredicted RBP12.5□□□□□ -0.41
COL6A3-203ENST00000353578 SLC18A2Q05940 514 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 CARTPTQ16568 116 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 FBXO31Q5XUX0 539 aaPredicted RBP12.5□□□□□ -0.41
COL6A3-203ENST00000353578 PIGXQ8TBF5 258 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 SELENOMQ8WWX9 145 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 SLC35C2Q9NQQ7 365 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 TESMINQ9Y4I5 508 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 CERS1P27544 350 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 PNCKQ6P2M8 343 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 ACTR3BQ9P1U1 418 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 PPEF1O14829 653 aaPredicted RBP12.5□□□□□ -0.41
COL6A3-203ENST00000353578 SLC30A10Q6XR72 485 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 ZNF280BQ86YH2 543 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 PARP8Q8N3A8 854 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 FATE1Q969F0 183 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 FBXO44Q9H4M3 255 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 FKBP7Q9Y680 259 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.5□□□□□ -0.41
COL6A3-203ENST00000353578 PAHP00439 452 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 ZNF177Q13360 481 aaPredicted RBP12.5□□□□□ -0.41
COL6A3-203ENST00000353578 MAMLD1Q13495 774 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 POU6F1Q14863 301 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 GLYATQ6IB77 296 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 ZNF425Q6IV72 752 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 SWSAP1Q6NVH7 229 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 PAQR5Q9NXK6 330 aaPredicted RBP12.5□□□□□ -0.41
COL6A3-203ENST00000353578 PPLO60437 1756 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 POLR1CO15160 346 aaPredicted RBP12.5□□□□□ -0.41
COL6A3-203ENST00000353578 ARHGEF15O94989 841 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 HMGN1P05114 100 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 UBXN2AP68543 259 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 ZDHHC20Q5W0Z9 365 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 DNAJC10Q8IXB1 793 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 ANKRD53Q8N9V6 530 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 ZSCAN1Q8NBB4 408 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 TAS2R8Q9NYW2 309 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 M0QYT0 321 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 CREBL2O60519 120 aaPredicted RBP12.5□□□□□ -0.41
COL6A3-203ENST00000353578 IL3P08700 152 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 RYKP34925 604 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 SNTA1Q13424 505 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 NDUFAF5Q5TEU4 345 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 ERMP1Q7Z2K6 904 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 BANPQ8N9N5 519 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 OR10T2Q8NGX3 314 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 KLHL6Q8WZ60 621 aa12.5□□□□□ -0.41
COL6A3-203ENST00000353578 NKD2Q969F2 451 aaPredicted RBP12.5□□□□□ -0.41
COL6A3-203ENST00000353578 PPRC1Q5VV67 1664 aaKnown RBP12.49□□□□□ -0.41
COL6A3-203ENST00000353578 CCR1P32246 355 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 ARF3P61204 181 aaPredicted RBP12.49□□□□□ -0.41
COL6A3-203ENST00000353578 ARF1P84077 181 aaKnown RBP12.49□□□□□ -0.41
COL6A3-203ENST00000353578 PUS3Q9BZE2 481 aaKnown RBP12.49□□□□□ -0.41
COL6A3-203ENST00000353578 ZNF408Q9H9D4 720 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 MGAT4BQ9UQ53 548 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 NEURL4Q96JN8 1562 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 NT5C1B-RDH14C9J2C7 533 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 CRTC2Q53ET0 693 aaPredicted RBP12.49□□□□□ -0.41
COL6A3-203ENST00000353578 LDLRAP1Q5SW96 308 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 LRIF1Q5T3J3 769 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 FUNDC2Q9BWH2 189 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 SPON1Q9HCB6 807 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 HCN2Q9UL51 889 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 TFR2Q9UP52 801 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms