RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 ARMC3Q5W041 872 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 TRIM40Q6P9F5 258 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 ABHD13Q7L211 337 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 LONP2Q86WA8 852 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 WDTC1Q8N5D0 677 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 SLC44A1Q8WWI5 657 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 ANKRD7Q92527 254 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 CSNK1G1Q9HCP0 422 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 TAGLN3Q9UI15 199 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 MTF2Q9Y483 593 aaPredicted RBP10.05□□□□□ -0.8
USP54-201ENST00000339859 LOC100653049A0A140TA62 436 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 KRT34O76011 436 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 ENO2P09104 434 aaPredicted RBP10.05□□□□□ -0.8
USP54-201ENST00000339859 GDF10P55107 478 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 ZBTB17Q13105 803 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 OR13C4Q8NGS5 318 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 WDR48Q8TAF3 677 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 ITFG1Q8TB96 612 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 VPS33AQ96AX1 596 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 TCEAL4Q96EI5 215 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 SLC46A2Q9BY10 475 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 CAB39LQ9H9S4 337 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 SEMA3GQ9NS98 782 aa10.05□□□□□ -0.8
USP54-201ENST00000339859 NLE1Q9NVX2 485 aaPredicted RBP10.05□□□□□ -0.8
USP54-201ENST00000339859 A0A1W2PQU0 124 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 B3GALT2O43825 422 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 TFE3P19532 575 aaPredicted RBP10.04□□□□□ -0.8
USP54-201ENST00000339859 TRIM71Q2Q1W2 868 aaKnown RBP10.04□□□□□ -0.8
USP54-201ENST00000339859 MPP7Q5T2T1 576 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 LYSMD4Q5XG99 296 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 KRT73Q86Y46 540 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 SPATA6LQ8N4H0 392 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 TMCO5AQ8N6Q1 288 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 ANLNQ9NQW6 1124 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 ZNF232Q9UNY5 417 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 COQ6Q9Y2Z9 468 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 SNX5Q9Y5X3 404 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 FFAR2O15552 330 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 OR1F1O43749 312 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 SIN3BO75182 1162 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 EPOP01588 193 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 HOXC13P31276 330 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 CD70P32970 193 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 HNMTP50135 292 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 FRG1Q14331 258 aaKnown RBP10.04□□□□□ -0.8
USP54-201ENST00000339859 ARHGAP36Q6ZRI8 547 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 LDB1Q86U70 411 aaPredicted RBP10.04□□□□□ -0.8
USP54-201ENST00000339859 UNC5BQ8IZJ1 945 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 CDYL2Q8N8U2 506 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 Q8N9G6 341 aaPredicted RBP10.04□□□□□ -0.8
USP54-201ENST00000339859 TERB1Q8NA31 727 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 SLC35B2Q8TB61 432 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 HM13Q8TCT9 377 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 ELSPBP1Q96BH3 223 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 ACSL5Q9ULC5 683 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 HCN4Q9Y3Q4 1203 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 C15orf38-AP3S2A0A0A6YYH1 394 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 AZIN1O14977 448 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 GRID2O43424 1007 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 GSTM1P09488 218 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 GSTM4Q03013 218 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 C9orf50Q5SZB4 431 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 BNC2Q6ZN30 1099 aaPredicted RBP10.04□□□□□ -0.8
USP54-201ENST00000339859 DPY19L3Q6ZPD9 716 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 CHMP1BQ7LBR1 199 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 ARPINQ7Z6K5 226 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 APCDD1Q8J025 514 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 MREGQ8N565 214 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 MFSD3Q96ES6 412 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 MIPEPQ99797 713 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 SPATA5L1Q9BVQ7 753 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 PCDH12Q9NPG4 1184 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 ITM2CQ9NQX7 267 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 ABLIM3O94929 683 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 TCN1P20061 433 aaPredicted RBP10.04□□□□□ -0.8
USP54-201ENST00000339859 INPP1P49441 399 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 SQLEQ14534 574 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 CLEC4FQ8N1N0 589 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 ATXN2LQ8WWM7 1075 aaKnown RBP10.04□□□□□ -0.8
USP54-201ENST00000339859 THTPAQ9BU02 230 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 ADPRHL2Q9NX46 363 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 STOML1Q9UBI4 398 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 CYTH4Q9UIA0 394 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 RGSL1A5PLK6 1076 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 ERN1O75460 977 aaKnown RBP10.04□□□□□ -0.8
USP54-201ENST00000339859 FYNP06241 537 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 NUDT17P0C025 328 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 TCF4P15884 667 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 CCR8P51685 355 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 CPSF6Q16630 551 aaKnown RBP eCLIP10.04□□□□□ -0.8
USP54-201ENST00000339859 CCNYL2Q5T2Q4 361 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 ANKRD22Q5VYY1 191 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 FAAH2Q6GMR7 532 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 ZNF621Q6ZSS3 439 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 SCD5Q86SK9 330 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 PSKH2Q96QS6 385 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 TPSD1Q9BZJ3 242 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 LINC00597Q9H2U6 94 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 POLR1BQ9H9Y6 1135 aa10.04□□□□□ -0.8
USP54-201ENST00000339859 PCDHGB3Q9Y5G1 929 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms