RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 GFI1Q99684 422 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 TUBA1CQ9BQE3 449 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 SYT17Q9BSW7 474 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 C1QTNF4Q9BXJ3 329 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 SPATC1LQ9H0A9 340 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 DDX31Q9H8H2 851 aaKnown RBP3.27□□□□□ -1.89
HMGB1-201ENST00000326004 FKRPQ9H9S5 495 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 NKIRAS2Q9NYR9 191 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 RCC2Q9P258 522 aaKnown RBP3.27□□□□□ -1.89
HMGB1-201ENST00000326004 BCCIPQ9P287 314 aaKnown RBP eCLIP3.27□□□□□ -1.89
HMGB1-201ENST00000326004 GAGE2DQ9UEU5 116 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 PLAGL1Q9UM63 463 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 ZNF148Q9UQR1 794 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 PTRH2Q9Y3E5 179 aaKnown RBP3.27□□□□□ -1.89
HMGB1-201ENST00000326004 RPS6KL1Q9Y6S9 549 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 NCAPD3P42695 1498 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 OR5K3A6NET4 321 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 A8MV72 311 aaPredicted RBP3.26□□□□□ -1.89
HMGB1-201ENST00000326004 ANKRD66B4E2M5 251 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 NDUFS4O43181 175 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 ZBTB43O43298 467 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 ERAL1O75616 437 aaKnown RBP3.26□□□□□ -1.89
HMGB1-201ENST00000326004 RSL1D1O76021 490 aaKnown RBP3.26□□□□□ -1.89
HMGB1-201ENST00000326004 TPOP07202 933 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 SNRNP70P08621 437 aaKnown RBP3.26□□□□□ -1.89
HMGB1-201ENST00000326004 FAM106CPP0CH98 169 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 AKR1B1P15121 316 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 ZNF23P17027 643 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 TRIM21P19474 475 aaKnown RBP3.26□□□□□ -1.89
HMGB1-201ENST00000326004 NR2F2P24468 414 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 TKTP29401 623 aaKnown RBP3.26□□□□□ -1.89
HMGB1-201ENST00000326004 IL15P40933 162 aaPredicted RBP3.26□□□□□ -1.89
HMGB1-201ENST00000326004 SUOXP51687 545 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 IFI35P80217 286 aaPredicted RBP3.26□□□□□ -1.89
HMGB1-201ENST00000326004 TMF1P82094 1093 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 PLIN5Q00G26 463 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 NUCB1Q02818 461 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 TROAPQ12815 778 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 ZBTB17Q13105 803 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 GTF2H2Q13888 395 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 BECN1Q14457 450 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 KRT33BQ14525 404 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 KCTD2Q14681 263 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 RAB6CQ53S08 254 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 MFSD4BQ5TF39 518 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 GPR139Q6DWJ6 353 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 DHRS7BQ6IAN0 325 aaPredicted RBP3.26□□□□□ -1.89
HMGB1-201ENST00000326004 CAPRIN2Q6IMN6 1127 aaKnown RBP3.26□□□□□ -1.89
HMGB1-201ENST00000326004 GTF2H2CQ6P1K8 395 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 SPSB3Q6PJ21 355 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 PRSS57Q6UWY2 283 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 INTS8Q75QN2 995 aaKnown RBP3.26□□□□□ -1.89
HMGB1-201ENST00000326004 ZNF534Q76KX8 674 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 KRT74Q7RTS7 529 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 SATL1Q86VE3 508 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 DNAAF5Q86Y56 855 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 GALNT13Q8IUC8 556 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 CEP97Q8IW35 865 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 ODF3L1Q8IXM7 274 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.26□□□□□ -1.89
HMGB1-201ENST00000326004 SCML4Q8N228 414 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 MUC20Q8N307 709 aaPredicted RBP3.26□□□□□ -1.89
HMGB1-201ENST00000326004 MINDY1Q8N5J2 469 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 ZNF441Q8N8Z8 693 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 SYT2Q8N9I0 419 aaPredicted RBP3.26□□□□□ -1.89
HMGB1-201ENST00000326004 SLC38A5Q8WUX1 472 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 SLC44A1Q8WWI5 657 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 FAM84BQ96KN1 310 aaPredicted RBP3.26□□□□□ -1.89
HMGB1-201ENST00000326004 IL17FQ96PD4 163 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 SMC6Q96SB8 1091 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 PCYT2Q99447 389 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 PAFAH2Q99487 392 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 RAB6CQ9H0N0 254 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 LRMDAQ9H2I8 198 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 DENND2DQ9H6A0 471 aaPredicted RBP3.26□□□□□ -1.89
HMGB1-201ENST00000326004 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.26□□□□□ -1.89
HMGB1-201ENST00000326004 KLHL1Q9NR64 748 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 ANKEF1Q9NU02 776 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 CLIC5Q9NZA1 410 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 CPSF2Q9P2I0 782 aaKnown RBP3.26□□□□□ -1.89
HMGB1-201ENST00000326004 POU2F3Q9UKI9 436 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 KCNS2Q9ULS6 477 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 DLGAP4Q9Y2H0 992 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 PCDHGA5Q9Y5G8 931 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 PRAG1Q86YV5 1406 aa3.26□□□□□ -1.89
HMGB1-201ENST00000326004 MYO15BQ96JP2 1530 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 ZCWPW2A0A1B0GU75 182 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 C15orf62A8K5M9 175 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 J3QR06 171 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 SH2B2O14492 632 aaPredicted RBP3.25□□□□□ -1.89
HMGB1-201ENST00000326004 ADAMDEC1O15204 470 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 WDR1O75083 606 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 VPREB1P12018 145 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 CDH1P12830 882 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 HLA-DOBP13765 273 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 ITGA2P17301 1181 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 TERF1P54274 439 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 PSMC6P62333 389 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 SIRPAP78324 504 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 COG7P83436 770 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms