RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 CEP41Q9BYV8 373 aa10.81□□□□□ -0.68
LSM3-201ENST00000306024 MIR1-1HGQ9H1L0 117 aa10.81□□□□□ -0.68
LSM3-201ENST00000306024 CSNK1G1Q9HCP0 422 aa10.81□□□□□ -0.68
LSM3-201ENST00000306024 COPG1Q9Y678 874 aaKnown RBP10.81□□□□□ -0.68
LSM3-201ENST00000306024 FAM159BA6NKW6 160 aa10.81□□□□□ -0.68
LSM3-201ENST00000306024 AREL1O15033 823 aa10.81□□□□□ -0.68
LSM3-201ENST00000306024 MTSS1O43312 755 aa10.81□□□□□ -0.68
LSM3-201ENST00000306024 MATN1P21941 496 aa10.81□□□□□ -0.68
LSM3-201ENST00000306024 TGM2P21980 687 aa10.81□□□□□ -0.68
LSM3-201ENST00000306024 IGFBP4P22692 258 aa10.81□□□□□ -0.68
LSM3-201ENST00000306024 MYF6P23409 242 aa10.81□□□□□ -0.68
LSM3-201ENST00000306024 IDUAP35475 653 aa10.81□□□□□ -0.68
LSM3-201ENST00000306024 KRR1Q13601 381 aaKnown RBP10.81□□□□□ -0.68
LSM3-201ENST00000306024 RAB33AQ14088 237 aa10.81□□□□□ -0.68
LSM3-201ENST00000306024 HABP4Q5JVS0 413 aaKnown RBP10.81□□□□□ -0.68
LSM3-201ENST00000306024 C9orf50Q5SZB4 431 aa10.81□□□□□ -0.68
LSM3-201ENST00000306024 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.81□□□□□ -0.68
LSM3-201ENST00000306024 CMASQ8NFW8 434 aaPredicted RBP10.81□□□□□ -0.68
LSM3-201ENST00000306024 MCFD2Q8NI22 146 aa10.81□□□□□ -0.68
LSM3-201ENST00000306024 HERVK_113Q902F9 699 aa10.81□□□□□ -0.68
LSM3-201ENST00000306024 BDH2Q9BUT1 245 aa10.81□□□□□ -0.68
LSM3-201ENST00000306024 HPS4Q9NQG7 708 aa10.81□□□□□ -0.68
LSM3-201ENST00000306024 MRPS23Q9Y3D9 190 aaKnown RBP10.81□□□□□ -0.68
LSM3-201ENST00000306024 FAM25AB3EWG3 89 aa10.81□□□□□ -0.68
LSM3-201ENST00000306024 FAM25CB3EWG5 89 aa10.81□□□□□ -0.68
LSM3-201ENST00000306024 FAM25GB3EWG6 89 aa10.81□□□□□ -0.68
LSM3-201ENST00000306024 RSL1D1O76021 490 aaKnown RBP10.81□□□□□ -0.68
LSM3-201ENST00000306024 CYBBP04839 570 aa10.81□□□□□ -0.68
LSM3-201ENST00000306024 GJA1P17302 382 aa10.81□□□□□ -0.68
LSM3-201ENST00000306024 GRIA1P42261 906 aa10.81□□□□□ -0.68
LSM3-201ENST00000306024 ZNF773Q6PK81 442 aa10.81□□□□□ -0.68
LSM3-201ENST00000306024 ITM2CQ9NQX7 267 aa10.81□□□□□ -0.68
LSM3-201ENST00000306024 FBXW11Q9UKB1 542 aa10.81□□□□□ -0.68
LSM3-201ENST00000306024 N6AMT1Q9Y5N5 214 aa10.81□□□□□ -0.68
LSM3-201ENST00000306024 KCNK1O00180 336 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 NUAK1O60285 661 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 ALDOAP04075 364 aaKnown RBP10.8□□□□□ -0.68
LSM3-201ENST00000306024 ELK4P28324 431 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 CCR10P46092 362 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 KPNA2P52292 529 aaKnown RBP10.8□□□□□ -0.68
LSM3-201ENST00000306024 GRTP1Q5TC63 336 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 REP15Q6BDI9 236 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 USP43Q70EL4 1123 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 LIMS2Q7Z4I7 341 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 TICAM1Q8IUC6 712 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 PACRGLQ8N7B6 248 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 GOLM1Q8NBJ4 401 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 SLC22A17Q8WUG5 538 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 MAGEE1Q9HCI5 957 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 ZBTB26Q9HCK0 441 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 AASDHPPTQ9NRN7 309 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 MPP6Q9NZW5 540 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 PMF1-BGLAPU3KQ54 211 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.8□□□□□ -0.68
LSM3-201ENST00000306024 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.8□□□□□ -0.68
LSM3-201ENST00000306024 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.8□□□□□ -0.68
LSM3-201ENST00000306024 GSTA4O15217 222 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 B4GAT1O43505 415 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 NRP2O60462 931 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 LRIG2O94898 1065 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 F7P08709 466 aaPredicted RBP10.8□□□□□ -0.68
LSM3-201ENST00000306024 CCT8P50990 548 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 ZNF177Q13360 481 aaPredicted RBP10.8□□□□□ -0.68
LSM3-201ENST00000306024 DLG2Q15700 870 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 SH2D5Q6ZV89 423 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 RFPL4BQ6ZWI9 263 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 C16orf59Q7L2K0 433 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 RYBPQ8N488 228 aaPredicted RBP10.8□□□□□ -0.68
LSM3-201ENST00000306024 ARL14EPQ8N8R7 260 aaPredicted RBP10.8□□□□□ -0.68
LSM3-201ENST00000306024 ZFP90Q8TF47 636 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 SNX19Q92543 992 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 HDAC10Q969S8 669 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 MUC3BQ9H195 1237 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 WDR6Q9NNW5 1121 aaKnown RBP10.8□□□□□ -0.68
LSM3-201ENST00000306024 ANAPC2Q9UJX6 822 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 TRAV19A0A0A6YYK7 116 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 ATP6AP2A0A1C7CYW4 349 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 A0A1W2PRU2 124 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 TK2O00142 265 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 TGM5O43548 720 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 ATP6AP2O75787 350 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 C2P06681 752 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 CYP4F8P98187 520 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 GBE1Q04446 702 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 TRAF3Q13114 568 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 SELENBP1Q13228 472 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 RAB30Q15771 203 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 TRNP1Q6NT89 227 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 ZCCHC8Q6NZY4 707 aaKnown RBP10.8□□□□□ -0.68
LSM3-201ENST00000306024 OR8H2Q8N162 312 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 FLCNQ8NFG4 579 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 SMG7Q92540 1137 aaKnown RBP10.8□□□□□ -0.68
LSM3-201ENST00000306024 MAELQ96JY0 434 aaKnown RBP10.8□□□□□ -0.68
LSM3-201ENST00000306024 SLC2A13Q96QE2 648 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 CPNE1Q99829 537 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 NAT9Q9BTE0 207 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 GKN1Q9NS71 199 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 FZD10Q9ULW2 581 aa10.8□□□□□ -0.68
LSM3-201ENST00000306024 A0A1W2PQ72 361 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 LINC01553A4QN01 128 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms