RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 GTF2H3Q13889 308 aa14.5□□□□□ -0.09
CCDC88B-201ENST00000301897 GALNT3Q14435 633 aa14.5□□□□□ -0.09
CCDC88B-201ENST00000301897 PLA2G4EQ3MJ16 856 aa14.5□□□□□ -0.09
CCDC88B-201ENST00000301897 ZNF648Q5T619 568 aaPredicted RBP14.5□□□□□ -0.09
CCDC88B-201ENST00000301897 CCDC70Q6NSX1 233 aa14.5□□□□□ -0.09
CCDC88B-201ENST00000301897 FAM92BQ6ZTR7 304 aa14.5□□□□□ -0.09
CCDC88B-201ENST00000301897 TMC3Q7Z5M5 1100 aa14.5□□□□□ -0.09
CCDC88B-201ENST00000301897 SYVN1Q86TM6 617 aa14.5□□□□□ -0.09
CCDC88B-201ENST00000301897 HPS6Q86YV9 775 aa14.5□□□□□ -0.09
CCDC88B-201ENST00000301897 OR8K5Q8NH50 307 aa14.5□□□□□ -0.09
CCDC88B-201ENST00000301897 BRSK1Q8TDC3 778 aa14.5□□□□□ -0.09
CCDC88B-201ENST00000301897 SSC4DQ8WTU2 575 aa14.5□□□□□ -0.09
CCDC88B-201ENST00000301897 EID2BQ96D98 161 aa14.5□□□□□ -0.09
CCDC88B-201ENST00000301897 TTC25Q96NG3 672 aa14.5□□□□□ -0.09
CCDC88B-201ENST00000301897 VPS35Q96QK1 796 aa14.5□□□□□ -0.09
CCDC88B-201ENST00000301897 CD180Q99467 661 aa14.5□□□□□ -0.09
CCDC88B-201ENST00000301897 SLC25A23Q9BV35 468 aa14.5□□□□□ -0.09
CCDC88B-201ENST00000301897 ZCCHC2Q9C0B9 1178 aaKnown RBP14.5□□□□□ -0.09
CCDC88B-201ENST00000301897 DTLQ9NZJ0 730 aa14.5□□□□□ -0.09
CCDC88B-201ENST00000301897 G3BP2Q9UN86 482 aaKnown RBP14.5□□□□□ -0.09
CCDC88B-201ENST00000301897 MED13Q9UHV7 2174 aa14.5□□□□□ -0.09
CCDC88B-201ENST00000301897 SEC16AO15027 2179 aa14.49□□□□□ -0.09
CCDC88B-201ENST00000301897 SHANK1Q9Y566 2161 aa14.49□□□□□ -0.09
CCDC88B-201ENST00000301897 A0A1B0GTH6 734 aa14.49□□□□□ -0.09
CCDC88B-201ENST00000301897 OR52A4PA6NMU1 304 aa14.49□□□□□ -0.09
CCDC88B-201ENST00000301897 GOLGA6L22H0YM25 854 aa14.49□□□□□ -0.09
CCDC88B-201ENST00000301897 KCNK1O00180 336 aa14.49□□□□□ -0.09
CCDC88B-201ENST00000301897 FECHP22830 423 aa14.49□□□□□ -0.09
CCDC88B-201ENST00000301897 GJC1P36383 396 aa14.49□□□□□ -0.09
CCDC88B-201ENST00000301897 ARL4DP49703 201 aa14.49□□□□□ -0.09
CCDC88B-201ENST00000301897 GBE1Q04446 702 aa14.49□□□□□ -0.09
CCDC88B-201ENST00000301897 TYRO3Q06418 890 aa14.49□□□□□ -0.09
CCDC88B-201ENST00000301897 CDK18Q07002 472 aa14.49□□□□□ -0.09
CCDC88B-201ENST00000301897 PPIDQ08752 370 aaKnown RBP14.49□□□□□ -0.09
CCDC88B-201ENST00000301897 HGSNATQ68CP4 663 aa14.49□□□□□ -0.09
CCDC88B-201ENST00000301897 PWWP2BQ6NUJ5 590 aa14.49□□□□□ -0.09
CCDC88B-201ENST00000301897 TMEM135Q86UB9 458 aa14.49□□□□□ -0.09
CCDC88B-201ENST00000301897 NT5DC3Q86UY8 548 aa14.49□□□□□ -0.09
CCDC88B-201ENST00000301897 TRAPPC5Q8IUR0 188 aa14.49□□□□□ -0.09
CCDC88B-201ENST00000301897 ZNF547Q8IVP9 402 aa14.49□□□□□ -0.09
CCDC88B-201ENST00000301897 IMP4Q96G21 291 aaKnown RBP14.49□□□□□ -0.09
CCDC88B-201ENST00000301897 GBP4Q96PP9 640 aa14.49□□□□□ -0.09
CCDC88B-201ENST00000301897 TRIB3Q96RU7 358 aa14.49□□□□□ -0.09
CCDC88B-201ENST00000301897 ACSS2Q9NR19 701 aa14.49□□□□□ -0.09
CCDC88B-201ENST00000301897 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.49□□□□□ -0.09
CCDC88B-201ENST00000301897 SHOC2Q9UQ13 582 aa14.49□□□□□ -0.09
CCDC88B-201ENST00000301897 ZNF711Q9Y462 761 aa14.49□□□□□ -0.09
CCDC88B-201ENST00000301897 ZNF451Q9Y4E5 1061 aa14.49□□□□□ -0.09
CCDC88B-201ENST00000301897 TNRC6AQ8NDV7 1962 aaKnown RBP14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 IGHV5-51A0A0C4DH38 117 aa14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 A0A1W2PQJ5 194 aa14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 TLCD2A6NGC4 264 aa14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 ZNF487B1APH4 448 aa14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 CPNE3O75131 537 aaKnown RBP14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 PROSCO94903 275 aa14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 DDAH2O95865 285 aa14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 SERPING1P05155 500 aa14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 BPIP17213 487 aa14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 GNLYP22749 145 aa14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 UQCRFS1P47985 274 aa14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 DRG2P55039 364 aaKnown RBP14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 SLC10A2Q12908 348 aaPredicted RBP14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 ATP13A4Q4VNC1 1196 aa14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 ZFYVE27Q5T4F4 411 aa14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 ZDHHC20Q5W0Z9 365 aa14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 PAPD7Q5XG87 772 aaKnown RBP14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 ALKBH5Q6P6C2 394 aaKnown RBP14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 CARFQ8N187 725 aa14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 PQLC3Q8N755 202 aa14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 GDAP1Q8TB36 358 aa14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 IQCDQ96DY2 449 aa14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 ZNF514Q96K75 400 aaPredicted RBP14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 SLC29A3Q9BZD2 475 aa14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 SLC25A51Q9H1U9 297 aa14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 CBX8Q9HC52 389 aa14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 MLXIPLQ9NP71 852 aa14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 FGF21Q9NSA1 209 aa14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 UVRAGQ9P2Y5 699 aa14.48□□□□□ -0.09
CCDC88B-201ENST00000301897 DPM1O60762 260 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 DNAJB5O75953 348 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 TIAF1O95411 115 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 SLC4A1P02730 911 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 PDGFAP04085 211 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 PIRTP0C851 137 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 FOLR1P15328 257 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 LPOP22079 712 aaPredicted RBP14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 TUBB4BP68371 445 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 HSD11B2P80365 405 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 DMPKQ09013 629 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 TMEM115Q12893 351 aaPredicted RBP14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 ZBTB17Q13105 803 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 TUBB2AQ13885 445 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 PDK1Q15118 436 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 NFKBIBQ15653 356 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 CHRNA6Q15825 494 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 ANO6Q4KMQ2 910 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 C11orf96Q7Z7L8 435 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 AMZ2Q86W34 360 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 VSIG1Q86XK7 387 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 CNTD1Q8N815 330 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms