RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 ZNF821O75541 412 aaPredicted RBP23.67■■□□□ 1.38
TRIM54-201ENST00000296098 OR4F21O95013 312 aa23.67■■□□□ 1.38
TRIM54-201ENST00000296098 CA5AP35218 305 aa23.67■■□□□ 1.38
TRIM54-201ENST00000296098 RHDQ02161 417 aa23.67■■□□□ 1.38
TRIM54-201ENST00000296098 LYPLAL1Q5VWZ2 237 aa23.67■■□□□ 1.38
TRIM54-201ENST00000296098 OR2AP1Q8NGE2 309 aa23.67■■□□□ 1.38
TRIM54-201ENST00000296098 CCT7Q99832 543 aa23.67■■□□□ 1.38
TRIM54-201ENST00000296098 RIC8BQ9NVN3 520 aa23.67■■□□□ 1.38
TRIM54-201ENST00000296098 INTS6Q9UL03 887 aaKnown RBP23.67■■□□□ 1.38
TRIM54-201ENST00000296098 TNPO3Q9Y5L0 923 aaKnown RBP23.67■■□□□ 1.38
TRIM54-201ENST00000296098 LEFTY2O00292 366 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 STAMBPO95630 424 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 ZCCHC18P0CG32 403 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 BPIP17213 487 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 GJA1P17302 382 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 ACRV1P26436 265 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 RGS4P49798 205 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 FOLH1Q04609 750 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 PCBP2Q15366 365 aaKnown RBP eCLIP23.66■■□□□ 1.38
TRIM54-201ENST00000296098 DGKKQ5KSL6 1271 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 IL23RQ5VWK5 629 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 BLOC1S3Q6QNY0 202 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 CCDC149Q6ZUS6 474 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 TICAM1Q8IUC6 712 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 CDYL2Q8N8U2 506 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 LKAAEAR1Q8TD35 194 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 IL1RL2Q9HB29 575 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 ABCD2Q9UBJ2 740 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 CRLS1Q9UJA2 301 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 AP4S1Q9Y587 144 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 HELZP42694 1942 aaKnown RBP23.66■■□□□ 1.38
TRIM54-201ENST00000296098 RAD51BO15315 384 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 RNASEH2AO75792 299 aaKnown RBP23.66■■□□□ 1.38
TRIM54-201ENST00000296098 C8AP07357 584 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 HSPA8P11142 646 aaKnown RBP23.66■■□□□ 1.38
TRIM54-201ENST00000296098 ITGB6P18564 788 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 PAX7P23759 505 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 ITGB8P26012 769 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 SPAM1P38567 509 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 GRIK2Q13002 908 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 MYO1HQ8N1T3 1032 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 ELMOD1Q8N336 334 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 MINDY1Q8N5J2 469 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 TMEM102Q8N9M5 508 aaPredicted RBP23.66■■□□□ 1.38
TRIM54-201ENST00000296098 OR52B6Q8NGF0 335 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 TSPEARQ8WU66 669 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 ACOX2Q99424 681 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 GID8Q9NWU2 228 aa23.66■■□□□ 1.38
TRIM54-201ENST00000296098 TCRBV3S1A0A5B6 114 aa23.65■■□□□ 1.38
TRIM54-201ENST00000296098 NRG2O14511 850 aaPredicted RBP23.65■■□□□ 1.38
TRIM54-201ENST00000296098 GRAMD4Q6IC98 578 aa23.65■■□□□ 1.38
TRIM54-201ENST00000296098 FBXL19Q6PCT2 694 aa23.65■■□□□ 1.38
TRIM54-201ENST00000296098 SCIMPQ6UWF3 145 aa23.65■■□□□ 1.38
TRIM54-201ENST00000296098 ZSWIM9Q86XI8 627 aa23.65■■□□□ 1.38
TRIM54-201ENST00000296098 OR2T11Q8NH01 316 aa23.65■■□□□ 1.38
TRIM54-201ENST00000296098 NAT14Q8WUY8 206 aa23.65■■□□□ 1.38
TRIM54-201ENST00000296098 LRCH3Q96II8 777 aa23.65■■□□□ 1.38
TRIM54-201ENST00000296098 BRINP2Q9C0B6 783 aa23.65■■□□□ 1.38
TRIM54-201ENST00000296098 NOL11Q9H8H0 719 aaKnown RBP23.65■■□□□ 1.38
TRIM54-201ENST00000296098 PRSS21Q9Y6M0 314 aa23.65■■□□□ 1.38
TRIM54-201ENST00000296098 PTPRSQ13332 1948 aa23.65■■□□□ 1.38
TRIM54-201ENST00000296098 FXYD1O00168 92 aa23.64■■□□□ 1.38
TRIM54-201ENST00000296098 NME4O00746 187 aa23.64■■□□□ 1.38
TRIM54-201ENST00000296098 DNAJA2O60884 412 aa23.64■■□□□ 1.38
TRIM54-201ENST00000296098 CAPNS1P04632 268 aa23.64■■□□□ 1.38
TRIM54-201ENST00000296098 KCNK10P57789 538 aa23.64■■□□□ 1.38
TRIM54-201ENST00000296098 ERVPABLB-1P60509 514 aa23.64■■□□□ 1.38
TRIM54-201ENST00000296098 ERVK-8P63133 956 aa23.64■■□□□ 1.38
TRIM54-201ENST00000296098 FOXM1Q08050 763 aa23.64■■□□□ 1.38
TRIM54-201ENST00000296098 CHRNA6Q15825 494 aa23.64■■□□□ 1.38
TRIM54-201ENST00000296098 PITRM1Q5JRX3 1037 aa23.64■■□□□ 1.38
TRIM54-201ENST00000296098 LETMD1Q6P1Q0 360 aa23.64■■□□□ 1.38
TRIM54-201ENST00000296098 CYP2R1Q6VVX0 501 aa23.64■■□□□ 1.38
TRIM54-201ENST00000296098 GOLGA7Q7Z5G4 137 aa23.64■■□□□ 1.38
TRIM54-201ENST00000296098 DHFR2Q86XF0 187 aa23.64■■□□□ 1.38
TRIM54-201ENST00000296098 DCBLD1Q8N8Z6 715 aa23.64■■□□□ 1.38
TRIM54-201ENST00000296098 PDPRQ8NCN5 879 aa23.64■■□□□ 1.38
TRIM54-201ENST00000296098 PBXIP1Q96AQ6 731 aa23.64■■□□□ 1.38
TRIM54-201ENST00000296098 DUS3LQ96G46 650 aaKnown RBP23.64■■□□□ 1.38
TRIM54-201ENST00000296098 RPL10LQ96L21 214 aaKnown RBP23.64■■□□□ 1.38
TRIM54-201ENST00000296098 CDK15Q96Q40 435 aa23.64■■□□□ 1.38
TRIM54-201ENST00000296098 C17orf80Q9BSJ5 609 aa23.64■■□□□ 1.38
TRIM54-201ENST00000296098 Q9H521 79 aa23.64■■□□□ 1.38
TRIM54-201ENST00000296098 SLC52A3Q9NQ40 469 aa23.64■■□□□ 1.38
TRIM54-201ENST00000296098 ANKRD12Q6UB98 2062 aa23.64■■□□□ 1.38
TRIM54-201ENST00000296098 FFAR2O15552 330 aa23.64■■□□□ 1.37
TRIM54-201ENST00000296098 SLC25A14O95258 325 aaPredicted RBP23.64■■□□□ 1.37
TRIM54-201ENST00000296098 SRCP12931 536 aa23.64■■□□□ 1.37
TRIM54-201ENST00000296098 UGT1A6P19224 532 aa23.64■■□□□ 1.37
TRIM54-201ENST00000296098 UGT1A1P22309 533 aa23.64■■□□□ 1.37
TRIM54-201ENST00000296098 UGT1A4P22310 534 aa23.64■■□□□ 1.37
TRIM54-201ENST00000296098 DGKAP23743 735 aa23.64■■□□□ 1.37
TRIM54-201ENST00000296098 UGT1A3P35503 534 aa23.64■■□□□ 1.37
TRIM54-201ENST00000296098 UGT1A5P35504 534 aa23.64■■□□□ 1.37
TRIM54-201ENST00000296098 ARL1P40616 181 aaPredicted RBP23.64■■□□□ 1.37
TRIM54-201ENST00000296098 CTSOP43234 321 aaPredicted RBP23.64■■□□□ 1.37
TRIM54-201ENST00000296098 STK19P49842 368 aaPredicted RBP23.64■■□□□ 1.37
TRIM54-201ENST00000296098 SNRPD1P62314 119 aaKnown RBP23.64■■□□□ 1.37
TRIM54-201ENST00000296098 RCAN2Q14206 197 aa23.64■■□□□ 1.37
TRIM54-201ENST00000296098 PDK3Q15120 406 aa23.64■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms