RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 LIPIQ6XZB0 460 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 SCARA5Q6ZMJ2 495 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 TXNRD3Q86VQ6 643 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 OR8H2Q8N162 312 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 OR8H1Q8NGG4 311 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 SLC38A4Q969I6 547 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 RNF145Q96MT1 663 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 TNKS2Q9H2K2 1166 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 SMURF2Q9HAU4 748 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 SLC39A1Q9NY26 324 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 ITGB4P16144 1822 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 LOXHD1Q8IVV2 1947 aa12.9□□□□□ -0.34
MSH2-201ENST00000233146 A0A0B4J293 547 aa12.9□□□□□ -0.35
MSH2-201ENST00000233146 POLRMTO00411 1230 aaKnown RBP12.9□□□□□ -0.35
MSH2-201ENST00000233146 AIREO43918 545 aa12.9□□□□□ -0.35
MSH2-201ENST00000233146 IFNA14P01570 189 aa12.9□□□□□ -0.35
MSH2-201ENST00000233146 MT-ND2P03891 347 aa12.9□□□□□ -0.35
MSH2-201ENST00000233146 PRELPP51888 382 aa12.9□□□□□ -0.35
MSH2-201ENST00000233146 SCRN3Q0VDG4 424 aa12.9□□□□□ -0.35
MSH2-201ENST00000233146 FRG1Q14331 258 aaKnown RBP12.9□□□□□ -0.35
MSH2-201ENST00000233146 FAM209BQ5JX69 171 aa12.9□□□□□ -0.35
MSH2-201ENST00000233146 ARMC4Q5T2S8 1044 aa12.9□□□□□ -0.35
MSH2-201ENST00000233146 GPATCH4Q5T3I0 446 aaKnown RBP12.9□□□□□ -0.35
MSH2-201ENST00000233146 FAM160B2Q86V87 743 aa12.9□□□□□ -0.35
MSH2-201ENST00000233146 CNIH3Q8TBE1 160 aa12.9□□□□□ -0.35
MSH2-201ENST00000233146 RAET1EQ8TD07 263 aa12.9□□□□□ -0.35
MSH2-201ENST00000233146 RNF31Q96EP0 1072 aa12.9□□□□□ -0.35
MSH2-201ENST00000233146 ATXN7L3BQ96GX2 97 aa12.9□□□□□ -0.35
MSH2-201ENST00000233146 TEKT5Q96M29 485 aa12.9□□□□□ -0.35
MSH2-201ENST00000233146 SPATA9Q9BWV2 254 aa12.9□□□□□ -0.35
MSH2-201ENST00000233146 UGT2B28Q9BY64 529 aa12.9□□□□□ -0.35
MSH2-201ENST00000233146 SPNS1Q9H2V7 528 aa12.9□□□□□ -0.35
MSH2-201ENST00000233146 GHITMQ9H3K2 345 aa12.9□□□□□ -0.35
MSH2-201ENST00000233146 EXD2Q9NVH0 621 aa12.9□□□□□ -0.35
MSH2-201ENST00000233146 TMLHEQ9NVH6 421 aa12.9□□□□□ -0.35
MSH2-201ENST00000233146 FNIP2Q9P278 1114 aa12.9□□□□□ -0.35
MSH2-201ENST00000233146 SRRDQ9UH36 339 aa12.9□□□□□ -0.35
MSH2-201ENST00000233146 AGO1Q9UL18 857 aaKnown RBP12.9□□□□□ -0.35
MSH2-201ENST00000233146 NDUFAF1Q9Y375 327 aa12.9□□□□□ -0.35
MSH2-201ENST00000233146 SNX8Q9Y5X2 465 aa12.9□□□□□ -0.35
MSH2-201ENST00000233146 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.89□□□□□ -0.35
MSH2-201ENST00000233146 MAFO75444 373 aaPredicted RBP12.89□□□□□ -0.35
MSH2-201ENST00000233146 TRUB2O95900 331 aaKnown RBP12.89□□□□□ -0.35
MSH2-201ENST00000233146 MLNP12872 115 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 MIPP30301 263 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 GSK3BP49841 420 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 ATP4BP51164 291 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 TPMTP51580 245 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 EIF6P56537 245 aaKnown RBP12.89□□□□□ -0.35
MSH2-201ENST00000233146 CAPRIN1Q14444 709 aaKnown RBP12.89□□□□□ -0.35
MSH2-201ENST00000233146 ZNF273Q14593 569 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 TRIP4Q15650 581 aaPredicted RBP12.89□□□□□ -0.35
MSH2-201ENST00000233146 OR8K5Q8NH50 307 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 PTERQ96BW5 349 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 PDLIM5Q96HC4 596 aaKnown RBP12.89□□□□□ -0.35
MSH2-201ENST00000233146 TRNT1Q96Q11 434 aaKnown RBP12.89□□□□□ -0.35
MSH2-201ENST00000233146 ACOX2Q99424 681 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 TASP1Q9H6P5 420 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 PGAP2Q9UHJ9 254 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 FAM92AA1XBS5 289 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 OR2A25A4D2G3 310 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 TARM1B6A8C7 271 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 PRSS44E7EML9 344 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 UBXN8O00124 270 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 NPHS1O60500 1241 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 ANGPTL1O95841 491 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 NPR3P17342 541 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 CHMP24386 653 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 C1QTNF8P60827 252 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 BTN1A1Q13410 526 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 PTPN20Q4JDL3 420 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 CFAP77Q6ZQR2 320 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 ILDR2Q71H61 639 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 RASGRP3Q8IV61 690 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 RDH10Q8IZV5 341 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 WDTC1Q8N5D0 677 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 WDR48Q8TAF3 677 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 STYXQ8WUJ0 223 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 ST8SIA2Q92186 375 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 ST8SIA4Q92187 359 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 PTP4A1Q93096 173 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 PYCR2Q96C36 320 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 REPS1Q96D71 796 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 C1QTNF1Q9BXJ1 281 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 FAM83DQ9H4H8 585 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 APOBEC3GQ9HC16 384 aaKnown RBP12.89□□□□□ -0.35
MSH2-201ENST00000233146 FAM49BQ9NUQ9 324 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 JAG2Q9Y219 1238 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 MRPS7Q9Y2R9 242 aaKnown RBP12.89□□□□□ -0.35
MSH2-201ENST00000233146 COL18A1P39060 1754 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 NRAPQ86VF7 1730 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 SIPA1L1O43166 1804 aa12.89□□□□□ -0.35
MSH2-201ENST00000233146 SULT1B1O43704 296 aa12.88□□□□□ -0.35
MSH2-201ENST00000233146 DLX3O60479 287 aa12.88□□□□□ -0.35
MSH2-201ENST00000233146 FADS2O95864 444 aaKnown RBP12.88□□□□□ -0.35
MSH2-201ENST00000233146 FOSP01100 380 aaPredicted RBP12.88□□□□□ -0.35
MSH2-201ENST00000233146 DNTTP04053 509 aa12.88□□□□□ -0.35
MSH2-201ENST00000233146 GPX3P22352 226 aa12.88□□□□□ -0.35
MSH2-201ENST00000233146 HIBADHP31937 336 aaKnown RBP12.88□□□□□ -0.35
MSH2-201ENST00000233146 CNSTQ6PJW8 725 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms