RNA–Protein interactions for RNA: ENST00000642021.1

PHGDH-233, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 2,794 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-233	ENST00000642021	PTPRN	Q16849	979 aa		13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	C6orf136	Q5SQH8	315 aa		13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	OTUD3	Q5T2D3	398 aa	Predicted RBP	13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	ACBD5	Q5T8D3	534 aa	Predicted RBP	13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	USP51	Q70EK9	711 aa		13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	SIDT2	Q8NBJ9	832 aa	Known RBP	13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	OR52B6	Q8NGF0	335 aa		13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	TSPEAR	Q8WU66	669 aa		13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	RNF145	Q96MT1	663 aa		13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	BRINP2	Q9C0B6	783 aa		13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	NTN4	Q9HB63	628 aa		13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	PDF	Q9HBH1	243 aa		13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	CD320	Q9NPF0	282 aa		13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	MARCH2	Q9P0N8	246 aa		13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	PCDHB8	Q9UN66	801 aa		13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	GIPC1	O14908	333 aa		13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	NIPSNAP2	O75323	286 aa		13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	ATP6V1G1	O75348	118 aa		13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	VPS4B	O75351	444 aa		13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	OR4F21	O95013	312 aa		13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	TFPT	P0C1Z6	253 aa		13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	ZNF140	P52738	457 aa	Predicted RBP	13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	MAPK10	P53779	464 aa		13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	ADARB1	P78563	741 aa	Known RBP	13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	NEDD8	Q15843	81 aa		13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	PARP15	Q460N3	678 aa		13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	AARS2	Q5JTZ9	985 aa	Known RBP	13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	TBC1D21	Q8IYX1	336 aa		13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	CDYL2	Q8N8U2	506 aa		13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	PLGRKT	Q9HBL7	147 aa		13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	NLE1	Q9NVX2	485 aa	Predicted RBP	13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	ZNF639	Q9UID6	485 aa		13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	CDH7	Q9ULB5	785 aa		13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	FNDC3A	Q9Y2H6	1198 aa	Known RBP	13.7	□□□□□ -0.22
PHGDH-233	ENST00000642021	PATJ	Q8NI35	1801 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	ZNF701	M0R085	212 aa	Predicted RBP	13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	SNX2	O60749	519 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	LDLR	P01130	860 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	SERPINF2	P08697	491 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	UROS	P10746	265 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	FCGR1A	P12314	374 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	ELK4	P28324	431 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	PLIN5	Q00G26	463 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	RAD51	Q06609	339 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	TRIP4	Q15650	581 aa	Predicted RBP	13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	C10orf120	Q5SQS8	335 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	PSAPL1	Q6NUJ1	521 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	XKR5	Q6UX68	686 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	ZBTB46	Q86UZ6	589 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	LRRC43	Q8N309	656 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	OR7D4	Q8NG98	312 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	EEF1AKMT1	Q8WVE0	214 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	TANK	Q92844	425 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	ISG20	Q96AZ6	181 aa	Known RBP	13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	MUS81	Q96NY9	551 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	FBXO44	Q9H4M3	255 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	ZFYVE28	Q9HCC9	887 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	INTS10	Q9NVR2	710 aa	Known RBP	13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	EIF2B4	Q9UI10	523 aa	Known RBP	13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	LEF1	Q9UJU2	399 aa	Predicted RBP	13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	NOD1	Q9Y239	953 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	SLC27A5	Q9Y2P5	690 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	SH3PXD2B	A1X283	911 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	UPK1A	O00322	258 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	NDUFS3	O75489	264 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	NDST3	O95803	873 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	IGHA2	P01877	340 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	AKR1A1	P14550	325 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	TCF3	P15923	654 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	ZNF24	P17028	368 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	DCK	P27707	260 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	EEFSEC	P57772	596 aa	Known RBP	13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	EMX2	Q04743	252 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	TAF10	Q12962	218 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	RBBP7	Q16576	425 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	C18orf21	Q32NC0	220 aa	Predicted RBP	13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	GLYAT	Q6IB77	296 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	FNDC5	Q8NAU1	212 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	RMDN1	Q96DB5	314 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	C8orf48	Q96LL4	319 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	PPM1M	Q96MI6	270 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	DOK1	Q99704	481 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	LTB4R2	Q9NPC1	389 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	ZNHIT2	Q9UHR6	403 aa		13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	PRG3	Q9Y2Y8	225 aa	Predicted RBP	13.69	□□□□□ -0.22
PHGDH-233	ENST00000642021	MYO16	Q9Y6X6	1858 aa		13.68	□□□□□ -0.22
PHGDH-233	ENST00000642021	E2F3	O00716	465 aa		13.68	□□□□□ -0.22
PHGDH-233	ENST00000642021	GPR39	O43194	453 aa		13.68	□□□□□ -0.22
PHGDH-233	ENST00000642021	KLK8	O60259	260 aa		13.68	□□□□□ -0.22
PHGDH-233	ENST00000642021	SYNCRIP	O60506	623 aa	Known RBP	13.68	□□□□□ -0.22
PHGDH-233	ENST00000642021	SNAP91	O60641	907 aa		13.68	□□□□□ -0.22
PHGDH-233	ENST00000642021	DUSP11	O75319	330 aa	Known RBP	13.68	□□□□□ -0.22
PHGDH-233	ENST00000642021	OAZ2	O95190	189 aa		13.68	□□□□□ -0.22
PHGDH-233	ENST00000642021	PRL	P01236	227 aa		13.68	□□□□□ -0.22
PHGDH-233	ENST00000642021	C7	P10643	843 aa		13.68	□□□□□ -0.22
PHGDH-233	ENST00000642021	PCNA	P12004	261 aa		13.68	□□□□□ -0.22
PHGDH-233	ENST00000642021	HOXD9	P28356	352 aa	Predicted RBP	13.68	□□□□□ -0.22
PHGDH-233	ENST00000642021	HTR6	P50406	440 aa		13.68	□□□□□ -0.22
PHGDH-233	ENST00000642021	KCNQ1	P51787	676 aa		13.68	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms