RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 ZNF552Q9H707 407 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 CDC14AQ9UNH5 594 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PSMD13Q9UNM6 376 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PCDHGA9Q9Y5G4 932 aaKnown RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 CDH2P19022 906 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 EPHB3P54753 998 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 EPHA5P54756 1037 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 ATP5IP56385 69 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 ERVFC1P60507 584 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 RAB2AP61019 212 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 MZT1Q08AG7 82 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF155Q12901 538 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 NPRL3Q12980 569 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 FAM196AQ6ZSG2 479 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 TMPRSS7Q7RTY8 843 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 FAM217AQ8IXS0 508 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 CYP2S1Q96SQ9 504 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 GPR52Q9Y2T5 361 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PCYT1BQ9Y5K3 369 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 CDHR2Q9BYE9 1310 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 OR2AG2A6NM03 316 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 LGALS16A8MUM7 142 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PEX12O00623 359 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 KCNK3O14649 394 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 CLEC2LP0C7M8 214 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 CPT2P23786 658 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF143P52747 638 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 TRAF2Q12933 501 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 MED21Q13503 144 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 NAE1Q13564 534 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PMS2P11Q13670 270 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 TYSND1Q2T9J0 566 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 FAM214AQ32MH5 1076 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 ILDR2Q71H61 639 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 UXS1Q8NBZ7 420 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 TCEAL4Q96EI5 215 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 TGS1Q96RS0 853 aaKnown RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 CACNG6Q9BXT2 260 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 FOXP1Q9H334 677 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 RNF41Q9H4P4 317 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 KCNK13Q9HB14 408 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 DBF4Q9UBU7 674 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 ATXN2Q99700 1313 aaKnown RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 A0A087X0B3 334 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 LINC00587B1AMM8 73 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 GREM1O60565 184 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 ENO1P06733 434 aaKnown RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PCSK2P16519 638 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PKLRP30613 574 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 SSTR2P30874 369 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 MECP2P51608 486 aaKnown RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PRKAA2P54646 552 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 ARSFP54793 590 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 MFAP4P55083 255 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PLA2G7Q13093 441 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF234Q14588 700 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 DDR2Q16832 855 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PLEKHN1Q494U1 663 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 SLC10A5Q5PT55 438 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 FCRLBQ6BAA4 426 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 NEPROQ6NW34 567 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PRSS55Q6UWB4 352 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 LINC00346Q8IVM7 164 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 SVOPQ8N4V2 548 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 CRACR2BQ8N4Y2 399 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 AP3S1Q92572 193 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 SMOQ99835 787 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 BTG4Q9NY30 223 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 MSH6P52701 1360 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 GYG2O15488 501 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 OR10H2O60403 315 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 CALCBP10092 127 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 CBR1P16152 277 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 NPR3P17342 541 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 TUBG1P23258 451 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 GLDCP23378 1020 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 ACVR2AP27037 513 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 FCGRTP55899 365 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 TLE2Q04725 743 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PLA1AQ53H76 456 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 RNFT1Q5M7Z0 435 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 WASHC2DQ5SRD0 308 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 OR7E24Q6IFN5 339 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 ACAD11Q709F0 780 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 TMEM17Q86X19 198 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 ZC3H7AQ8IWR0 971 aaKnown RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 UTP23Q9BRU9 249 aaKnown RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 WNT8AQ9H1J5 351 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 TUBG2Q9NRH3 451 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PCDHB5Q9Y5E4 795 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 ANKHD1Q8IWZ3 2542 aaKnown RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 GPR75-ASB3A0A0A6YYF3 556 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 MARCH11A6NNE9 402 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 MEIS3P2A8K0S8 358 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 E5RI56 91 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 SPOPO43791 374 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 H2AFYO75367 372 aaKnown RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 TRMUO75648 421 aaKnown RBP3.54□□□□□ -1.84
SCN1A-221ENST00000641996 RECQL4O94761 1208 aa3.54□□□□□ -1.84
SCN1A-221ENST00000641996 IL6STP40189 918 aaPredicted RBP3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms