RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 FILIP1LQ4L180 1135 aa19.09■□□□□ 0.65
CLN3-262ENST00000637699 KCTD6Q8NC69 237 aa19.09■□□□□ 0.65
CLN3-262ENST00000637699 CCNYQ8ND76 341 aa19.09■□□□□ 0.65
CLN3-262ENST00000637699 GPR26Q8NDV2 337 aa19.09■□□□□ 0.65
CLN3-262ENST00000637699 CT55Q8WUE5 264 aa19.09■□□□□ 0.65
CLN3-262ENST00000637699 ADGRE3Q9BY15 652 aa19.09■□□□□ 0.65
CLN3-262ENST00000637699 ZFYVE1Q9HBF4 777 aa19.09■□□□□ 0.65
CLN3-262ENST00000637699 TMEM63CQ9P1W3 806 aa19.09■□□□□ 0.65
CLN3-262ENST00000637699 TRIM10Q9UDY6 481 aa19.09■□□□□ 0.65
CLN3-262ENST00000637699 VPS4AQ9UN37 437 aa19.09■□□□□ 0.65
CLN3-262ENST00000637699 SHOC2Q9UQ13 582 aa19.09■□□□□ 0.65
CLN3-262ENST00000637699 OR52A4PA6NMU1 304 aa19.08■□□□□ 0.64
CLN3-262ENST00000637699 TTLL8A6PVC2 850 aa19.08■□□□□ 0.64
CLN3-262ENST00000637699 MYO1FO00160 1098 aa19.08■□□□□ 0.64
CLN3-262ENST00000637699 CHUKO15111 745 aa19.08■□□□□ 0.64
CLN3-262ENST00000637699 KMOO15229 486 aa19.08■□□□□ 0.64
CLN3-262ENST00000637699 MTX2O75431 263 aa19.08■□□□□ 0.64
CLN3-262ENST00000637699 PIRTP0C851 137 aa19.08■□□□□ 0.64
CLN3-262ENST00000637699 GBE1Q04446 702 aa19.08■□□□□ 0.64
CLN3-262ENST00000637699 FAM182AQ5T1J6 154 aa19.08■□□□□ 0.64
CLN3-262ENST00000637699 IRGCQ6NXR0 463 aa19.08■□□□□ 0.64
CLN3-262ENST00000637699 PRSS42Q7Z5A4 293 aa19.08■□□□□ 0.64
CLN3-262ENST00000637699 LRRTM4Q86VH4 590 aa19.08■□□□□ 0.64
CLN3-262ENST00000637699 PPP1R3BQ86XI6 285 aa19.08■□□□□ 0.64
CLN3-262ENST00000637699 CPNE8Q86YQ8 564 aa19.08■□□□□ 0.64
CLN3-262ENST00000637699 KLHL6Q8WZ60 621 aa19.08■□□□□ 0.64
CLN3-262ENST00000637699 GLYATL1Q969I3 302 aa19.08■□□□□ 0.64
CLN3-262ENST00000637699 ZSCAN5AQ9BUG6 496 aa19.08■□□□□ 0.64
CLN3-262ENST00000637699 LHX9Q9NQ69 397 aa19.08■□□□□ 0.64
CLN3-262ENST00000637699 PCDHGA6Q9Y5G7 932 aa19.08■□□□□ 0.64
CLN3-262ENST00000637699 GPR89AB7ZAQ6 455 aa19.07■□□□□ 0.64
CLN3-262ENST00000637699 KCNK1O00180 336 aa19.07■□□□□ 0.64
CLN3-262ENST00000637699 AGFG2O95081 481 aa19.07■□□□□ 0.64
CLN3-262ENST00000637699 TIAF1O95411 115 aa19.07■□□□□ 0.64
CLN3-262ENST00000637699 GPR89BP0CG08 455 aa19.07■□□□□ 0.64
CLN3-262ENST00000637699 BRAFP15056 766 aa19.07■□□□□ 0.64
CLN3-262ENST00000637699 MX2P20592 715 aa19.07■□□□□ 0.64
CLN3-262ENST00000637699 GNLYP22749 145 aa19.07■□□□□ 0.64
CLN3-262ENST00000637699 CAPZBP47756 277 aa19.07■□□□□ 0.64
CLN3-262ENST00000637699 DRG2P55039 364 aaKnown RBP19.07■□□□□ 0.64
CLN3-262ENST00000637699 SLC10A2Q12908 348 aaPredicted RBP19.07■□□□□ 0.64
CLN3-262ENST00000637699 GPR18Q14330 331 aa19.07■□□□□ 0.64
CLN3-262ENST00000637699 LARP7Q4G0J3 582 aaKnown RBP eCLIP19.07■□□□□ 0.64
CLN3-262ENST00000637699 EFCAB3Q8N7B9 438 aa19.07■□□□□ 0.64
CLN3-262ENST00000637699 CXorf40BQ96DE9 158 aa19.07■□□□□ 0.64
CLN3-262ENST00000637699 ZDHHC12Q96GR4 267 aa19.07■□□□□ 0.64
CLN3-262ENST00000637699 TRIM55Q9BYV6 548 aa19.07■□□□□ 0.64
CLN3-262ENST00000637699 SLC40A1Q9NP59 571 aa19.07■□□□□ 0.64
CLN3-262ENST00000637699 POT1Q9NUX5 634 aa19.07■□□□□ 0.64
CLN3-262ENST00000637699 GOLGA6L3A6NEY3 463 aa19.06■□□□□ 0.64
CLN3-262ENST00000637699 MT-ND3P03897 115 aa19.06■□□□□ 0.64
CLN3-262ENST00000637699 CYP1A2P05177 515 aa19.06■□□□□ 0.64
CLN3-262ENST00000637699 NELFEP18615 380 aaKnown RBP19.06■□□□□ 0.64
CLN3-262ENST00000637699 TYRO3Q06418 890 aa19.06■□□□□ 0.64
CLN3-262ENST00000637699 SEMA5AQ13591 1074 aa19.06■□□□□ 0.64
CLN3-262ENST00000637699 ABRAXAS1Q6UWZ7 409 aa19.06■□□□□ 0.64
CLN3-262ENST00000637699 ZNF547Q8IVP9 402 aa19.06■□□□□ 0.64
CLN3-262ENST00000637699 APLFQ8IW19 511 aaPredicted RBP19.06■□□□□ 0.64
CLN3-262ENST00000637699 TRAM1L1Q8N609 369 aa19.06■□□□□ 0.64
CLN3-262ENST00000637699 PQLC3Q8N755 202 aa19.06■□□□□ 0.64
CLN3-262ENST00000637699 NAP1L5Q96NT1 182 aaPredicted RBP19.06■□□□□ 0.64
CLN3-262ENST00000637699 RUFY1Q96T51 708 aa19.06■□□□□ 0.64
CLN3-262ENST00000637699 ZNF670Q9BS34 389 aa19.06■□□□□ 0.64
CLN3-262ENST00000637699 TIMM29Q9BSF4 260 aa19.06■□□□□ 0.64
CLN3-262ENST00000637699 BRD8Q9H0E9 1235 aa19.06■□□□□ 0.64
CLN3-262ENST00000637699 ACTL8Q9H568 366 aa19.06■□□□□ 0.64
CLN3-262ENST00000637699 AKIRIN1Q9H9L7 192 aaPredicted RBP19.06■□□□□ 0.64
CLN3-262ENST00000637699 PDE7BQ9NP56 450 aa19.06■□□□□ 0.64
CLN3-262ENST00000637699 PLEKHB1Q9UF11 243 aaPredicted RBP19.06■□□□□ 0.64
CLN3-262ENST00000637699 TNRC6AQ8NDV7 1962 aaKnown RBP19.06■□□□□ 0.64
CLN3-262ENST00000637699 UNC79Q9P2D8 2635 aa19.05■□□□□ 0.64
CLN3-262ENST00000637699 PRRC2CQ9Y520 2896 aaKnown RBP19.05■□□□□ 0.64
CLN3-262ENST00000637699 CDK14O94921 469 aa19.05■□□□□ 0.64
CLN3-262ENST00000637699 RECKO95980 971 aa19.05■□□□□ 0.64
CLN3-262ENST00000637699 IDSP22304 550 aa19.05■□□□□ 0.64
CLN3-262ENST00000637699 DCDC1P59894 354 aa19.05■□□□□ 0.64
CLN3-262ENST00000637699 PPP1CAP62136 330 aa19.05■□□□□ 0.64
CLN3-262ENST00000637699 ZBTB17Q13105 803 aa19.05■□□□□ 0.64
CLN3-262ENST00000637699 KCNAB1Q14722 419 aa19.05■□□□□ 0.64
CLN3-262ENST00000637699 PDK2Q15119 407 aa19.05■□□□□ 0.64
CLN3-262ENST00000637699 KHDC1Q4VXA5 237 aaKnown RBP19.05■□□□□ 0.64
CLN3-262ENST00000637699 FHL5Q5TD97 284 aa19.05■□□□□ 0.64
CLN3-262ENST00000637699 HGSNATQ68CP4 663 aa19.05■□□□□ 0.64
CLN3-262ENST00000637699 CAPRIN2Q6IMN6 1127 aaKnown RBP19.05■□□□□ 0.64
CLN3-262ENST00000637699 PWWP2BQ6NUJ5 590 aa19.05■□□□□ 0.64
CLN3-262ENST00000637699 FAM199XQ6PEV8 388 aaPredicted RBP19.05■□□□□ 0.64
CLN3-262ENST00000637699 TMC3Q7Z5M5 1100 aa19.05■□□□□ 0.64
CLN3-262ENST00000637699 CNTD1Q8N815 330 aa19.05■□□□□ 0.64
CLN3-262ENST00000637699 CPT1CQ8TCG5 803 aa19.05■□□□□ 0.64
CLN3-262ENST00000637699 HDAC11Q96DB2 347 aa19.05■□□□□ 0.64
CLN3-262ENST00000637699 CEP41Q9BYV8 373 aa19.05■□□□□ 0.64
CLN3-262ENST00000637699 GPR63Q9BZJ6 419 aa19.05■□□□□ 0.64
CLN3-262ENST00000637699 NAT10Q9H0A0 1025 aaKnown RBP19.05■□□□□ 0.64
CLN3-262ENST00000637699 RAD18Q9NS91 495 aa19.05■□□□□ 0.64
CLN3-262ENST00000637699 RARRES3Q9UL19 164 aa19.05■□□□□ 0.64
CLN3-262ENST00000637699 ZNF711Q9Y462 761 aa19.05■□□□□ 0.64
CLN3-262ENST00000637699 IGHV5-51A0A0C4DH38 117 aa19.04■□□□□ 0.64
CLN3-262ENST00000637699 C21orf140B9A014 251 aa19.04■□□□□ 0.64
CLN3-262ENST00000637699 VEGFDO43915 354 aa19.04■□□□□ 0.64
CLN3-262ENST00000637699 FOLR1P15328 257 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms