RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 ODC1P11926 461 aa4.92□□□□□ -1.62
VPS13D-213ENST00000613099 PTX3P26022 381 aaPredicted RBP4.92□□□□□ -1.62
VPS13D-213ENST00000613099 CEBPAP49715 358 aaPredicted RBP4.92□□□□□ -1.62
VPS13D-213ENST00000613099 SCNN1DP51172 638 aa4.92□□□□□ -1.62
VPS13D-213ENST00000613099 GPR158Q5T848 1215 aa4.92□□□□□ -1.62
VPS13D-213ENST00000613099 ZNF782Q6ZMW2 699 aaPredicted RBP4.92□□□□□ -1.62
VPS13D-213ENST00000613099 SLCO2A1Q92959 643 aa4.92□□□□□ -1.62
VPS13D-213ENST00000613099 DPCDQ9BVM2 203 aaPredicted RBP4.92□□□□□ -1.62
VPS13D-213ENST00000613099 DHX35Q9H5Z1 703 aaKnown RBP4.92□□□□□ -1.62
VPS13D-213ENST00000613099 C3orf14Q9HBI5 128 aa4.92□□□□□ -1.62
VPS13D-213ENST00000613099 ZDHHC18Q9NUE0 388 aa4.92□□□□□ -1.62
VPS13D-213ENST00000613099 ACO1P21399 889 aaKnown RBP4.92□□□□□ -1.62
VPS13D-213ENST00000613099 HOXA1P49639 335 aaPredicted RBP4.92□□□□□ -1.62
VPS13D-213ENST00000613099 CSTF1Q05048 431 aaKnown RBP4.92□□□□□ -1.62
VPS13D-213ENST00000613099 UNC5AQ6ZN44 842 aa4.92□□□□□ -1.62
VPS13D-213ENST00000613099 ATCAYQ86WG3 371 aa4.92□□□□□ -1.62
VPS13D-213ENST00000613099 TFB1MQ8WVM0 346 aaKnown RBP4.92□□□□□ -1.62
VPS13D-213ENST00000613099 TMED9Q9BVK6 235 aa4.92□□□□□ -1.62
VPS13D-213ENST00000613099 SH3BGRL2Q9UJC5 107 aa4.92□□□□□ -1.62
VPS13D-213ENST00000613099 TLR6Q9Y2C9 796 aa4.92□□□□□ -1.62
VPS13D-213ENST00000613099 UBXN8O00124 270 aa4.92□□□□□ -1.62
VPS13D-213ENST00000613099 TOR1AO14656 332 aa4.92□□□□□ -1.62
VPS13D-213ENST00000613099 OR56A5P0C7T3 313 aa4.92□□□□□ -1.62
VPS13D-213ENST00000613099 SDC4P31431 198 aa4.92□□□□□ -1.62
VPS13D-213ENST00000613099 ARFIP1P53367 373 aa4.92□□□□□ -1.62
VPS13D-213ENST00000613099 ARF5P84085 180 aa4.92□□□□□ -1.62
VPS13D-213ENST00000613099 PMS2P3Q13401 168 aa4.92□□□□□ -1.62
VPS13D-213ENST00000613099 FAM196AQ6ZSG2 479 aa4.92□□□□□ -1.62
VPS13D-213ENST00000613099 RALGPS2Q86X27 583 aaPredicted RBP4.92□□□□□ -1.62
VPS13D-213ENST00000613099 SLC13A3Q8WWT9 602 aa4.92□□□□□ -1.62
VPS13D-213ENST00000613099 ST8SIA4Q92187 359 aa4.92□□□□□ -1.62
VPS13D-213ENST00000613099 SPOCK2Q92563 424 aa4.92□□□□□ -1.62
VPS13D-213ENST00000613099 SLC7A6OSQ96CW6 309 aaPredicted RBP4.92□□□□□ -1.62
VPS13D-213ENST00000613099 IFT27Q9BW83 186 aa4.92□□□□□ -1.62
VPS13D-213ENST00000613099 SLITRK2Q9H156 845 aa4.92□□□□□ -1.62
VPS13D-213ENST00000613099 LRRC40Q9H9A6 602 aa4.92□□□□□ -1.62
VPS13D-213ENST00000613099 MED16Q9Y2X0 877 aa4.92□□□□□ -1.62
VPS13D-213ENST00000613099 TMEM131LA2VDJ0 1609 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 AGAP5A6NIR3 686 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 DYNC1LI2O43237 492 aaPredicted RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 RB1P06400 928 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 AGTR1P30556 359 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 ARCN1P48444 511 aaKnown RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 MEOX2P50222 304 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 LSMEM2Q8N112 164 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 ANKRD52Q8NB46 1076 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 AGBL3Q8NEM8 1001 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 RASGRP4Q8TDF6 673 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 STON2Q8WXE9 905 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 TTC9Q92623 222 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 DSN1Q9H410 356 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 TOGARAM1Q9Y4F4 1720 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 ARAP2Q8WZ64 1704 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 CHP2O43745 196 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 SCELO95171 688 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 ARIH2O95376 493 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 ERBB2P04626 1255 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 TSPAN5P62079 268 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 DUSP6Q16828 381 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 TRIM48Q8IWZ4 208 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 OR10R2Q8NGX6 335 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 EEF1AKMT1Q8WVE0 214 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 MTIF3Q9H2K0 278 aaKnown RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 POLE4Q9NR33 117 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 ADAMTS6Q9UKP5 1117 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 RFC4P35249 363 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 MSX2P35548 267 aaPredicted RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 RPL4P36578 427 aaKnown RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 FGD3Q5JSP0 725 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 KDELC2Q7Z4H8 507 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 FAM126BQ8IXS8 530 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 PIAS4Q8N2W9 510 aaPredicted RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 HDDC3Q8N4P3 179 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 RHOXF1Q8NHV9 184 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 COQ8AQ8NI60 647 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 ACTR8Q9H981 624 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 UNKLQ9H9P5 680 aaKnown RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 NDRG3Q9UGV2 375 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 TMX2Q9Y320 296 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 IGSF1Q8N6C5 1336 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 RPS6KA4O75676 772 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 MAD2L1Q13257 205 aaPredicted RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 SMAD1Q15797 465 aaKnown RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 DRICH1Q6PGQ1 229 aaPredicted RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 R3HCC1LQ7Z5L2 792 aaKnown RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 FKBP10Q96AY3 582 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 ANKRD60Q9BZ19 345 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 KMT5AQ9NQR1 393 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 BARHL2Q9NY43 387 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 MOCS1Q9NZB8 636 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 CMAHPQ9Y471 501 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 STX16O14662 325 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 DNTTP04053 509 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 RPL19P84098 196 aaKnown RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 CXXC5Q7LFL8 322 aaKnown RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 SPPL2CQ8IUH8 684 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 GPR156Q8NFN8 814 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 UROC1Q96N76 676 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 NEDD4LQ96PU5 975 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 CTPS2Q9NRF8 586 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms