RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 POT1Q9NUX5 634 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 SAE1Q9UBE0 346 aaPredicted RBP9.66□□□□□ -0.86
VRK3-216ENST00000599342 FASNP49327 2511 aaKnown RBP9.66□□□□□ -0.86
VRK3-216ENST00000599342 MGAQ8IWI9 3026 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 MN1Q10571 1320 aaPredicted RBP9.65□□□□□ -0.86
VRK3-216ENST00000599342 ZFC3H1O60293 1989 aaKnown RBP9.65□□□□□ -0.86
VRK3-216ENST00000599342 ZNF891A8MT65 544 aaPredicted RBP9.65□□□□□ -0.86
VRK3-216ENST00000599342 AURKAO14965 403 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 POLR1CO15160 346 aaPredicted RBP9.65□□□□□ -0.86
VRK3-216ENST00000599342 CAPN5O15484 640 aaPredicted RBP9.65□□□□□ -0.86
VRK3-216ENST00000599342 UBXN7O94888 489 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 ZRANB2O95218 330 aaKnown RBP eCLIP9.65□□□□□ -0.86
VRK3-216ENST00000599342 LIFP15018 202 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 XRCC1P18887 633 aaPredicted RBP9.65□□□□□ -0.86
VRK3-216ENST00000599342 IDSP22304 550 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 RPL10P27635 214 aaKnown RBP9.65□□□□□ -0.86
VRK3-216ENST00000599342 MAP4P27816 1152 aaKnown RBP9.65□□□□□ -0.86
VRK3-216ENST00000599342 HMGCLP35914 325 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 SPAM1P38567 509 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 HALP42357 657 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 MAGEA1P43355 309 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 HADHBP55084 474 aaKnown RBP9.65□□□□□ -0.86
VRK3-216ENST00000599342 WNT3AP56704 352 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 SPA17Q15506 151 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 PPP2R5EQ16537 467 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 ATP13A5Q4VNC0 1218 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 CCDC181Q5TID7 509 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 BORAQ6PGQ7 559 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 TMEM26Q6ZUK4 368 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 PID1Q7Z2X4 250 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 RBM12BQ8IXT5 1001 aaKnown RBP9.65□□□□□ -0.86
VRK3-216ENST00000599342 KATNAL2Q8IYT4 538 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 RCOR2Q8IZ40 523 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 SLC25A41Q8N5S1 370 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 IPMKQ8NFU5 416 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 BRSK1Q8TDC3 778 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 BLOC1S5Q8TDH9 187 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 HTR3CQ8WXA8 447 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 CXorf40BQ96DE9 158 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 RBM41Q96IZ5 413 aaKnown RBP9.65□□□□□ -0.86
VRK3-216ENST00000599342 TGM7Q96PF1 710 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 FERMT1Q9BQL6 677 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 EFHD1Q9BUP0 239 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 SLC12A9Q9BXP2 914 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 TRIM5Q9C035 493 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 TRIT1Q9H3H1 467 aaKnown RBP9.65□□□□□ -0.86
VRK3-216ENST00000599342 GOLPH3Q9H4A6 298 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 GPN2Q9H9Y4 310 aaPredicted RBP9.65□□□□□ -0.86
VRK3-216ENST00000599342 FBXO8Q9NRD0 319 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.65□□□□□ -0.86
VRK3-216ENST00000599342 HACD3Q9P035 362 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 RSPH14Q9UHP6 348 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 PILRAQ9UKJ1 303 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 PKP3Q9Y446 797 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 SPO11Q9Y5K1 396 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 ALG6Q9Y672 507 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 ATMQ13315 3056 aa9.65□□□□□ -0.86
VRK3-216ENST00000599342 hCG_1818297A0A087WSY0 165 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 LOC285095A0A1B0GVY8 99 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 HACD1B0YJ81 288 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 F5H423 210 aaPredicted RBP9.64□□□□□ -0.87
VRK3-216ENST00000599342 PPFIA2O75334 1257 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 RASSF9O75901 435 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 STK17BO94768 372 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 EPOP01588 193 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 ANKRD34CP0C6C1 535 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 TYRP1P17643 537 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 HLA-DPA1P20036 260 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 CD68P34810 354 aaPredicted RBP9.64□□□□□ -0.87
VRK3-216ENST00000599342 CYLC1P35663 651 aaPredicted RBP9.64□□□□□ -0.87
VRK3-216ENST00000599342 SLC19A1P41440 591 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 CHRNA4P43681 627 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 DRG2P55039 364 aaKnown RBP9.64□□□□□ -0.87
VRK3-216ENST00000599342 GFERP55789 205 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 FOXM1Q08050 763 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 WASHC5Q12768 1159 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 TMEM115Q12893 351 aaPredicted RBP9.64□□□□□ -0.87
VRK3-216ENST00000599342 TBX2Q13207 712 aaPredicted RBP9.64□□□□□ -0.87
VRK3-216ENST00000599342 MPP3Q13368 585 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 ITGA9Q13797 1035 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 NOMO1Q15155 1222 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 SLC1A5Q15758 541 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 TAZQ16635 292 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 KHDC1Q4VXA5 237 aaKnown RBP9.64□□□□□ -0.87
VRK3-216ENST00000599342 SIRPB2Q5JXA9 342 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 KDELC1Q6UW63 502 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 FAM151BQ6UXP7 276 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 ZNF547Q8IVP9 402 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 ZNF567Q8N184 647 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 C9orf72Q96LT7 481 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 CATSPER2Q96P56 530 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 QKIQ96PU8 341 aaKnown RBP eCLIP9.64□□□□□ -0.87
VRK3-216ENST00000599342 FCRL5Q96RD9 977 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 APMAPQ9HDC9 416 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 STARD5Q9NSY2 213 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 SCHIP1Q9P0W5 487 aaPredicted RBP9.64□□□□□ -0.87
VRK3-216ENST00000599342 ZNF624Q9P2J8 865 aaPredicted RBP9.64□□□□□ -0.87
VRK3-216ENST00000599342 TRIM10Q9UDY6 481 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 SLC23A2Q9UGH3 650 aa9.64□□□□□ -0.87
VRK3-216ENST00000599342 SDK2Q58EX2 2172 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms