RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 ATXN10Q9UBB4 475 aa12.34□□□□□ -0.43
TRIM28-212ENST00000597995 INTUQ9ULD6 942 aa12.34□□□□□ -0.43
TRIM28-212ENST00000597995 TTLL3Q9Y4R7 772 aa12.34□□□□□ -0.43
TRIM28-212ENST00000597995 GOLGA6L3A6NEY3 463 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 ZNF487B1APH4 448 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 MKRN2OSH3BPM6 223 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 KCNK1O00180 336 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 CHUKO15111 745 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 UBXN7O94888 489 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 LCA5LO95447 670 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 VIPP01282 170 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 MMP2P08253 660 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 ZNF8P17098 575 aaPredicted RBP12.33□□□□□ -0.44
TRIM28-212ENST00000597995 MX2P20592 715 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 COMTP21964 271 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 F8A1P23610 371 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 DLSTP36957 453 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 DCDC1P59894 354 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 FOXM1Q08050 763 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 PPIDQ08752 370 aaKnown RBP12.33□□□□□ -0.44
TRIM28-212ENST00000597995 ZBTB17Q13105 803 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 ATP1A1-AS1Q5TC04 95 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 LRRC38Q5VT99 294 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 PDPK2PQ6A1A2 396 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 VSIG1Q86XK7 387 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 RNF25Q96BH1 459 aaPredicted RBP12.33□□□□□ -0.44
TRIM28-212ENST00000597995 OLFM3Q96PB7 478 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 GOLPH3Q9H4A6 298 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 ZNF768Q9H5H4 540 aaKnown RBP12.33□□□□□ -0.44
TRIM28-212ENST00000597995 RAD18Q9NS91 495 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 KLC4Q9NSK0 619 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 KCND3Q9UK17 655 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 CROTQ9UKG9 612 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 TP53TG5Q9Y2B4 290 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 MAN2B2Q9Y2E5 1009 aa12.33□□□□□ -0.44
TRIM28-212ENST00000597995 MRPS18BQ9Y676 258 aaKnown RBP12.33□□□□□ -0.44
TRIM28-212ENST00000597995 USP9YO00507 2555 aaPredicted RBP12.32□□□□□ -0.44
TRIM28-212ENST00000597995 SLC25A14O95258 325 aaPredicted RBP12.32□□□□□ -0.44
TRIM28-212ENST00000597995 JCHAINP01591 159 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 FGF5P12034 268 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 ZNF28P17035 718 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 AMD1P17707 334 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 SLC19A1P41440 591 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 MAGEA1P43355 309 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 ZNF75DP51815 510 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 HADHBP55084 474 aaKnown RBP12.32□□□□□ -0.44
TRIM28-212ENST00000597995 GFERP55789 205 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 ADCY2Q08462 1091 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 TAZQ16635 292 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 ZNF569Q5MCW4 686 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 ZFYVE27Q5T4F4 411 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 ABRAXAS1Q6UWZ7 409 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 MFSD7Q6UXD7 560 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 WASH2PQ6VEQ5 465 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 B4GALNT4Q76KP1 1039 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 ATCAYQ86WG3 371 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 TRIM48Q8IWZ4 208 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 CCDC13Q8IYE1 715 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 TEX19Q8NA77 164 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 CCNYQ8ND76 341 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 EID2BQ96D98 161 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 PSMG3-AS1Q96PY0 264 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 OR6C1Q96RD1 312 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 ZSCAN5AQ9BUG6 496 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 OSGEPL1Q9H4B0 414 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 ZFYVE1Q9HBF4 777 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 WASH6PQ9NQA3 447 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 SCHIP1Q9P0W5 487 aaPredicted RBP12.32□□□□□ -0.44
TRIM28-212ENST00000597995 ZNF624Q9P2J8 865 aaPredicted RBP12.32□□□□□ -0.44
TRIM28-212ENST00000597995 NFKBIL1Q9UBC1 381 aaPredicted RBP12.32□□□□□ -0.44
TRIM28-212ENST00000597995 POLHQ9Y253 713 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 PLAAQ9Y263 795 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 PCDHGA6Q9Y5G7 932 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 HEY1Q9Y5J3 304 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 ALG6Q9Y672 507 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 SLC30A1Q9Y6M5 507 aa12.32□□□□□ -0.44
TRIM28-212ENST00000597995 RCCD1A6NED2 376 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 KMOO15229 486 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 VEGFDO43915 354 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 NDUFA10O95299 355 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 MT-ND3P03897 115 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 KRT1P04264 644 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 CCNYL3P0C7X3 344 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 TNNT1P13805 278 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 ZNF7P17097 686 aaPredicted RBP12.31□□□□□ -0.44
TRIM28-212ENST00000597995 TYRP1P17643 537 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 FECHP22830 423 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 CD86P42081 329 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 CDKN2BP42772 138 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 SLC1A1P43005 524 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 MARCKSL1P49006 195 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 IFI35P80217 286 aaPredicted RBP12.31□□□□□ -0.44
TRIM28-212ENST00000597995 ERV3-1Q14264 604 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 LLGL1Q15334 1064 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.31□□□□□ -0.44
TRIM28-212ENST00000597995 CYB5D1Q6P9G0 228 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 PRSS42Q7Z5A4 293 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 TMC3Q7Z5M5 1100 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 ADGRG6Q86SQ4 1221 aa12.31□□□□□ -0.44
TRIM28-212ENST00000597995 RASGRP3Q8IV61 690 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms