RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 AGRPO00253 132 aa13.41□□□□□ -0.26
TRIM28-211ENST00000597968 SNX2O60749 519 aa13.41□□□□□ -0.26
TRIM28-211ENST00000597968 STK17BO94768 372 aa13.41□□□□□ -0.26
TRIM28-211ENST00000597968 CDK14O94921 469 aa13.41□□□□□ -0.26
TRIM28-211ENST00000597968 ZNF7P17097 686 aaPredicted RBP13.41□□□□□ -0.26
TRIM28-211ENST00000597968 IDSP22304 550 aa13.41□□□□□ -0.26
TRIM28-211ENST00000597968 POLE2P56282 527 aa13.41□□□□□ -0.26
TRIM28-211ENST00000597968 DMPKQ09013 629 aa13.41□□□□□ -0.26
TRIM28-211ENST00000597968 KCNAB2Q13303 367 aa13.41□□□□□ -0.26
TRIM28-211ENST00000597968 TAZQ16635 292 aa13.41□□□□□ -0.26
TRIM28-211ENST00000597968 PRSS42Q7Z5A4 293 aa13.41□□□□□ -0.26
TRIM28-211ENST00000597968 BPHLQ86WA6 291 aaPredicted RBP13.41□□□□□ -0.26
TRIM28-211ENST00000597968 ZNF761Q86XN6 746 aaPredicted RBP13.41□□□□□ -0.26
TRIM28-211ENST00000597968 TRIM48Q8IWZ4 208 aa13.41□□□□□ -0.26
TRIM28-211ENST00000597968 RNF214Q8ND24 703 aa13.41□□□□□ -0.26
TRIM28-211ENST00000597968 JPH3Q8WXH2 748 aaPredicted RBP13.41□□□□□ -0.26
TRIM28-211ENST00000597968 ZDHHC12Q96GR4 267 aa13.41□□□□□ -0.26
TRIM28-211ENST00000597968 AGAP3Q96P47 875 aa13.41□□□□□ -0.26
TRIM28-211ENST00000597968 FCRL4Q96PJ5 515 aa13.41□□□□□ -0.26
TRIM28-211ENST00000597968 ZNF768Q9H5H4 540 aaKnown RBP13.41□□□□□ -0.26
TRIM28-211ENST00000597968 PRDM8Q9NQV8 689 aa13.41□□□□□ -0.26
TRIM28-211ENST00000597968 ABHD10Q9NUJ1 306 aa13.41□□□□□ -0.26
TRIM28-211ENST00000597968 FAM153AQ9UHL3 310 aa13.41□□□□□ -0.26
TRIM28-211ENST00000597968 ANAPC2Q9UJX6 822 aa13.41□□□□□ -0.26
TRIM28-211ENST00000597968 LOC285095A0A1B0GVY8 99 aa13.4□□□□□ -0.26
TRIM28-211ENST00000597968 A8MU76 341 aa13.4□□□□□ -0.26
TRIM28-211ENST00000597968 PSTPIP1O43586 416 aa13.4□□□□□ -0.26
TRIM28-211ENST00000597968 MT-ND3P03897 115 aa13.4□□□□□ -0.26
TRIM28-211ENST00000597968 BPIP17213 487 aa13.4□□□□□ -0.26
TRIM28-211ENST00000597968 AMD1P17707 334 aa13.4□□□□□ -0.26
TRIM28-211ENST00000597968 SLC19A1P41440 591 aa13.4□□□□□ -0.26
TRIM28-211ENST00000597968 STAT5AP42229 794 aa13.4□□□□□ -0.26
TRIM28-211ENST00000597968 HALP42357 657 aa13.4□□□□□ -0.26
TRIM28-211ENST00000597968 CAPZBP47756 277 aa13.4□□□□□ -0.26
TRIM28-211ENST00000597968 HADHBP55084 474 aaKnown RBP13.4□□□□□ -0.26
TRIM28-211ENST00000597968 CYP4F2P78329 520 aa13.4□□□□□ -0.26
TRIM28-211ENST00000597968 TMEM115Q12893 351 aaPredicted RBP13.4□□□□□ -0.26
TRIM28-211ENST00000597968 GTF2H3Q13889 308 aa13.4□□□□□ -0.26
TRIM28-211ENST00000597968 CLCA4Q14CN2 919 aa13.4□□□□□ -0.26
TRIM28-211ENST00000597968 PRKD1Q15139 912 aaPredicted RBP13.4□□□□□ -0.26
TRIM28-211ENST00000597968 SKOR2Q2VWA4 1001 aaPredicted RBP13.4□□□□□ -0.26
TRIM28-211ENST00000597968 SNAP47Q5SQN1 464 aa13.4□□□□□ -0.26
TRIM28-211ENST00000597968 KLHL35Q6PF15 583 aa13.4□□□□□ -0.26
TRIM28-211ENST00000597968 RFX6Q8HWS3 928 aa13.4□□□□□ -0.26
TRIM28-211ENST00000597968 CNGA4Q8IV77 575 aa13.4□□□□□ -0.26
TRIM28-211ENST00000597968 TFB1MQ8WVM0 346 aaKnown RBP13.4□□□□□ -0.26
TRIM28-211ENST00000597968 APOBEC4Q8WW27 367 aaKnown RBP13.4□□□□□ -0.26
TRIM28-211ENST00000597968 SEC14L1Q92503 715 aa13.4□□□□□ -0.26
TRIM28-211ENST00000597968 ZNF514Q96K75 400 aaPredicted RBP13.4□□□□□ -0.26
TRIM28-211ENST00000597968 TTC25Q96NG3 672 aa13.4□□□□□ -0.26
TRIM28-211ENST00000597968 C19orf43Q9BQ61 176 aa13.4□□□□□ -0.26
TRIM28-211ENST00000597968 TBC1D10AQ9BXI6 508 aa13.4□□□□□ -0.26
TRIM28-211ENST00000597968 OSGEPL1Q9H4B0 414 aa13.4□□□□□ -0.26
TRIM28-211ENST00000597968 NHEJ1Q9H9Q4 299 aaPredicted RBP13.4□□□□□ -0.26
TRIM28-211ENST00000597968 SLC40A1Q9NP59 571 aa13.4□□□□□ -0.26
TRIM28-211ENST00000597968 SEMA5BQ9P283 1151 aa13.4□□□□□ -0.26
TRIM28-211ENST00000597968 SHOC2Q9UQ13 582 aa13.4□□□□□ -0.26
TRIM28-211ENST00000597968 KCTD3Q9Y597 815 aa13.4□□□□□ -0.26
TRIM28-211ENST00000597968 PCDHB3Q9Y5E6 796 aa13.4□□□□□ -0.26
TRIM28-211ENST00000597968 ZFC3H1O60293 1989 aaKnown RBP13.4□□□□□ -0.27
TRIM28-211ENST00000597968 PDZK1P1A8MUH7 402 aa13.39□□□□□ -0.27
TRIM28-211ENST00000597968 KRT1P04264 644 aa13.39□□□□□ -0.27
TRIM28-211ENST00000597968 PYGMP11217 842 aa13.39□□□□□ -0.27
TRIM28-211ENST00000597968 HLA-DPA1P20036 260 aa13.39□□□□□ -0.27
TRIM28-211ENST00000597968 PTPN3P26045 913 aa13.39□□□□□ -0.27
TRIM28-211ENST00000597968 CDC20Q12834 499 aa13.39□□□□□ -0.27
TRIM28-211ENST00000597968 ITGA9Q13797 1035 aa13.39□□□□□ -0.27
TRIM28-211ENST00000597968 SEPT6Q14141 434 aa13.39□□□□□ -0.27
TRIM28-211ENST00000597968 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.39□□□□□ -0.27
TRIM28-211ENST00000597968 LDLRAP1Q5SW96 308 aa13.39□□□□□ -0.27
TRIM28-211ENST00000597968 FAM182AQ5T1J6 154 aa13.39□□□□□ -0.27
TRIM28-211ENST00000597968 ALS2CLQ60I27 953 aa13.39□□□□□ -0.27
TRIM28-211ENST00000597968 KDELC2Q7Z4H8 507 aa13.39□□□□□ -0.27
TRIM28-211ENST00000597968 ZNF547Q8IVP9 402 aa13.39□□□□□ -0.27
TRIM28-211ENST00000597968 VSTM4Q8IW00 320 aa13.39□□□□□ -0.27
TRIM28-211ENST00000597968 BEND7Q8N7W2 519 aaPredicted RBP13.39□□□□□ -0.27
TRIM28-211ENST00000597968 ZFPM2Q8WW38 1151 aa13.39□□□□□ -0.27
TRIM28-211ENST00000597968 KLHL6Q8WZ60 621 aa13.39□□□□□ -0.27
TRIM28-211ENST00000597968 CALR3Q96L12 384 aaKnown RBP13.39□□□□□ -0.27
TRIM28-211ENST00000597968 CHP1Q99653 195 aa13.39□□□□□ -0.27
TRIM28-211ENST00000597968 ZNF624Q9P2J8 865 aaPredicted RBP13.39□□□□□ -0.27
TRIM28-211ENST00000597968 KCND3Q9UK17 655 aa13.39□□□□□ -0.27
TRIM28-211ENST00000597968 TRHDEQ9UKU6 1024 aa13.39□□□□□ -0.27
TRIM28-211ENST00000597968 LOC101059948A0A1B0GTJ6 334 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 HACD1B0YJ81 288 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 SPOPO43791 374 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 MFAP3LO75121 409 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 ZNF189O75820 626 aaPredicted RBP13.38□□□□□ -0.27
TRIM28-211ENST00000597968 MT-CYBP00156 380 aaPredicted RBP13.38□□□□□ -0.27
TRIM28-211ENST00000597968 FGF5P12034 268 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 TCN2P20062 427 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 SPAM1P38567 509 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 CDKN2BP42772 138 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 MAPK9P45984 424 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 MPP3Q13368 585 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 PCSK7Q16549 785 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 ATP13A5Q4VNC0 1218 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 C6orf15Q6UXA7 325 aaPredicted RBP13.38□□□□□ -0.27
TRIM28-211ENST00000597968 TIPARPQ7Z3E1 657 aaKnown RBP13.38□□□□□ -0.27
TRIM28-211ENST00000597968 C11orf96Q7Z7L8 435 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms