RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	C1orf146	Q5VVC0	180 aa		15.27	■□□□□ 0.04
DDX39A-209	ENST00000589318	ATG16L1	Q676U5	607 aa		15.27	■□□□□ 0.04
DDX39A-209	ENST00000589318	LRRC8E	Q6NSJ5	796 aa		15.27	■□□□□ 0.04
DDX39A-209	ENST00000589318	CRTC1	Q6UUV9	634 aa		15.27	■□□□□ 0.04
DDX39A-209	ENST00000589318	SATL1	Q86VE3	508 aa		15.27	■□□□□ 0.04
DDX39A-209	ENST00000589318	SFTPA1	Q8IWL2	248 aa		15.27	■□□□□ 0.04
DDX39A-209	ENST00000589318	MARVELD2	Q8N4S9	558 aa		15.27	■□□□□ 0.04
DDX39A-209	ENST00000589318	GRIN3A	Q8TCU5	1115 aa		15.27	■□□□□ 0.04
DDX39A-209	ENST00000589318	ANKRD49	Q8WVL7	239 aa		15.27	■□□□□ 0.04
DDX39A-209	ENST00000589318	NMD3	Q96D46	503 aa	Known RBP	15.27	■□□□□ 0.04
DDX39A-209	ENST00000589318	CHFR	Q96EP1	664 aa		15.27	■□□□□ 0.04
DDX39A-209	ENST00000589318	TSPAN17	Q96FV3	270 aa		15.27	■□□□□ 0.04
DDX39A-209	ENST00000589318	PANX3	Q96QZ0	392 aa		15.27	■□□□□ 0.04
DDX39A-209	ENST00000589318	FAM96A	Q9H5X1	160 aa		15.27	■□□□□ 0.04
DDX39A-209	ENST00000589318	ELOVL2	Q9NXB9	296 aa		15.27	■□□□□ 0.04
DDX39A-209	ENST00000589318	PADI4	Q9UM07	663 aa		15.27	■□□□□ 0.04
DDX39A-209	ENST00000589318	FNDC3A	Q9Y2H6	1198 aa	Known RBP	15.27	■□□□□ 0.04
DDX39A-209	ENST00000589318	PLXNB3	Q9ULL4	1909 aa		15.27	■□□□□ 0.04
DDX39A-209	ENST00000589318	EYS	Q5T1H1	3165 aa		15.27	■□□□□ 0.03
DDX39A-209	ENST00000589318	CAPN14	A8MX76	684 aa		15.27	■□□□□ 0.03
DDX39A-209	ENST00000589318	DENR	O43583	198 aa	Known RBP	15.27	■□□□□ 0.03
DDX39A-209	ENST00000589318	BAG2	O95816	211 aa		15.27	■□□□□ 0.03
DDX39A-209	ENST00000589318	CTSL	P07711	333 aa		15.27	■□□□□ 0.03
DDX39A-209	ENST00000589318	LHCGR	P22888	699 aa		15.27	■□□□□ 0.03
DDX39A-209	ENST00000589318	ARRB2	P32121	409 aa		15.27	■□□□□ 0.03
DDX39A-209	ENST00000589318	CA5A	P35218	305 aa		15.27	■□□□□ 0.03
DDX39A-209	ENST00000589318	SEMG2	Q02383	582 aa		15.27	■□□□□ 0.03
DDX39A-209	ENST00000589318	RAD51	Q06609	339 aa		15.27	■□□□□ 0.03
DDX39A-209	ENST00000589318	MMEL1	Q495T6	779 aa		15.27	■□□□□ 0.03
DDX39A-209	ENST00000589318	SETMAR	Q53H47	684 aa	Predicted RBP	15.27	■□□□□ 0.03
DDX39A-209	ENST00000589318	ZRANB3	Q5FWF4	1079 aa		15.27	■□□□□ 0.03
DDX39A-209	ENST00000589318	GDPD4	Q6W3E5	623 aa		15.27	■□□□□ 0.03
DDX39A-209	ENST00000589318	TPRG1	Q6ZUI0	275 aa		15.27	■□□□□ 0.03
DDX39A-209	ENST00000589318	HEXDC	Q8WVB3	486 aa		15.27	■□□□□ 0.03
DDX39A-209	ENST00000589318	KLHL32	Q96NJ5	620 aa		15.27	■□□□□ 0.03
DDX39A-209	ENST00000589318	BIRC8	Q96P09	236 aa		15.27	■□□□□ 0.03
DDX39A-209	ENST00000589318	HEPH	Q9BQS7	1158 aa		15.27	■□□□□ 0.03
DDX39A-209	ENST00000589318	UNK	Q9C0B0	810 aa	Known RBP	15.27	■□□□□ 0.03
DDX39A-209	ENST00000589318	ZNF576	Q9H609	170 aa		15.27	■□□□□ 0.03
DDX39A-209	ENST00000589318	KCNK13	Q9HB14	408 aa		15.27	■□□□□ 0.03
DDX39A-209	ENST00000589318	FAIM	Q9NVQ4	179 aa		15.27	■□□□□ 0.03
DDX39A-209	ENST00000589318	THG1L	Q9NWX6	298 aa	Known RBP	15.27	■□□□□ 0.03
DDX39A-209	ENST00000589318		A8MX80	341 aa		15.26	■□□□□ 0.03
DDX39A-209	ENST00000589318	VILL	O15195	856 aa		15.26	■□□□□ 0.03
DDX39A-209	ENST00000589318	ITM2A	O43736	263 aa		15.26	■□□□□ 0.03
DDX39A-209	ENST00000589318	LEFTY1	O75610	366 aa		15.26	■□□□□ 0.03
DDX39A-209	ENST00000589318	CLPTM1	O96005	669 aa		15.26	■□□□□ 0.03
DDX39A-209	ENST00000589318	APOA4	P06727	396 aa		15.26	■□□□□ 0.03
DDX39A-209	ENST00000589318	CDK4	P11802	303 aa		15.26	■□□□□ 0.03
DDX39A-209	ENST00000589318	BPI	P17213	487 aa		15.26	■□□□□ 0.03
DDX39A-209	ENST00000589318	NNMT	P40261	264 aa		15.26	■□□□□ 0.03
DDX39A-209	ENST00000589318	GRIA2	P42262	883 aa		15.26	■□□□□ 0.03
DDX39A-209	ENST00000589318	STX3	Q13277	289 aa		15.26	■□□□□ 0.03
DDX39A-209	ENST00000589318	ATAT1	Q5SQI0	421 aa		15.26	■□□□□ 0.03
DDX39A-209	ENST00000589318	UGT2A3	Q6UWM9	527 aa		15.26	■□□□□ 0.03
DDX39A-209	ENST00000589318	ZNF366	Q8N895	744 aa		15.26	■□□□□ 0.03
DDX39A-209	ENST00000589318	RDH11	Q8TC12	318 aa		15.26	■□□□□ 0.03
DDX39A-209	ENST00000589318	GAB3	Q8WWW8	586 aa		15.26	■□□□□ 0.03
DDX39A-209	ENST00000589318	TTC1	Q99614	292 aa		15.26	■□□□□ 0.03
DDX39A-209	ENST00000589318	PRO3102	Q9H379	93 aa		15.26	■□□□□ 0.03
DDX39A-209	ENST00000589318	BRD9	Q9H8M2	597 aa		15.26	■□□□□ 0.03
DDX39A-209	ENST00000589318	IL26	Q9NPH9	171 aa		15.26	■□□□□ 0.03
DDX39A-209	ENST00000589318	DEC1	Q9P2X7	70 aa		15.26	■□□□□ 0.03
DDX39A-209	ENST00000589318	XPR1	Q9UBH6	696 aa		15.26	■□□□□ 0.03
DDX39A-209	ENST00000589318	NUMBL	Q9Y6R0	609 aa		15.26	■□□□□ 0.03
DDX39A-209	ENST00000589318	UBA6	A0AVT1	1052 aa	Predicted RBP	15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	TSPAN11	A1L157	253 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	CASQ2	O14958	399 aa	Predicted RBP	15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	OR1I1	O60431	355 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	CBFA2T3	O75081	653 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	SRP72	O76094	671 aa	Known RBP	15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	SERPINE1	P05121	402 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	OPRD1	P41143	372 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	RECQL	P46063	649 aa	Predicted RBP	15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	TTPA	P49638	278 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	KDSR	Q06136	332 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	CACNG1	Q06432	222 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	CSHL1	Q14406	222 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	LRRC66	Q68CR7	880 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	GRAMD4	Q6IC98	578 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	PARM1	Q6UWI2	310 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	ZYG11A	Q6WRX3	759 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	NAPRT	Q6XQN6	538 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	USP45	Q70EL2	814 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	PAF1	Q8N7H5	531 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	ICA1L	Q8NDH6	482 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	FNDC8	Q8TC99	324 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	FGF14	Q92915	247 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	WWP1	Q9H0M0	922 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	THAP1	Q9NVV9	213 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	GTSE1	Q9NYZ3	720 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	BRWD1	Q9NSI6	2320 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318		A0A1W2PQ67	120 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	NDUFS3	O75489	264 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	LTA4H	P09960	611 aa	Known RBP	15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	RALB	P11234	206 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	LAMP2	P13473	410 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	POR	P16435	677 aa	Predicted RBP	15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	LTBR	P36941	435 aa		15.25	■□□□□ 0.03
DDX39A-209	ENST00000589318	SLC26A3	P40879	764 aa		15.25	■□□□□ 0.03

Retrieved 100 of 20,778 RNA–protein pairs in 20 ms