RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 ACP5P13686 325 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 BPIP17213 487 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 VCLP18206 1134 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 PSMB4P28070 264 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 CHRNA4P43681 627 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 LSSP48449 732 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 MAZP56270 477 aaKnown RBP8.01□□□□□ -1.13
VPS53-214ENST00000572607 CCL7P80098 99 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 PDE1BQ01064 536 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 EIF3IQ13347 325 aaKnown RBP8.01□□□□□ -1.13
VPS53-214ENST00000572607 ITGA9Q13797 1035 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 RPS6KA1Q15418 735 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 CLPPQ16740 277 aaPredicted RBP8.01□□□□□ -1.13
VPS53-214ENST00000572607 INSCQ1MX18 579 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.01□□□□□ -1.13
VPS53-214ENST00000572607 P3H1Q32P28 736 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 TBC1D25Q3MII6 688 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 AADACL2Q6P093 401 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 FOXR1Q6PIV2 292 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 SPRED1Q7Z699 444 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 LRRTM4Q86VH4 590 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 NRROSQ86YC3 692 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 ARL14Q8N4G2 192 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 AVL9Q8NBF6 648 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 WDR36Q8NI36 951 aaKnown RBP8.01□□□□□ -1.13
VPS53-214ENST00000572607 CCDC110Q8TBZ0 833 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 BRSK1Q8TDC3 778 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 FGF11Q92914 225 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 ATXN7L3BQ96GX2 97 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 HES6Q96HZ4 224 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 ZNF578Q96N58 590 aaPredicted RBP8.01□□□□□ -1.13
VPS53-214ENST00000572607 WDR24Q96S15 920 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 SLC38A3Q99624 504 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 FRMD8P1Q9BZ68 369 aaPredicted RBP8.01□□□□□ -1.13
VPS53-214ENST00000572607 OR2AG1Q9H205 316 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 BPIFA1Q9NP55 256 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 FEZ2Q9UHY8 353 aaPredicted RBP8.01□□□□□ -1.13
VPS53-214ENST00000572607 CNOT6Q9ULM6 557 aaKnown RBP8.01□□□□□ -1.13
VPS53-214ENST00000572607 PRKAB1Q9Y478 270 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 ENTPD2Q9Y5L3 495 aa8.01□□□□□ -1.13
VPS53-214ENST00000572607 OAS3Q9Y6K5 1087 aaKnown RBP8.01□□□□□ -1.13
VPS53-214ENST00000572607 A0A087WV48 116 aa8□□□□□ -1.13
VPS53-214ENST00000572607 C5orf60A6NFR6 353 aa8□□□□□ -1.13
VPS53-214ENST00000572607 OR5K4A6NMS3 321 aa8□□□□□ -1.13
VPS53-214ENST00000572607 D6RAR5 112 aa8□□□□□ -1.13
VPS53-214ENST00000572607 AURKAO14965 403 aa8□□□□□ -1.13
VPS53-214ENST00000572607 KMOO15229 486 aa8□□□□□ -1.13
VPS53-214ENST00000572607 PSMD3O43242 534 aa8□□□□□ -1.13
VPS53-214ENST00000572607 DNAJC6O75061 913 aa8□□□□□ -1.13
VPS53-214ENST00000572607 CDK14O94921 469 aa8□□□□□ -1.13
VPS53-214ENST00000572607 CPNE6O95741 557 aa8□□□□□ -1.13
VPS53-214ENST00000572607 GAS8O95995 478 aa8□□□□□ -1.13
VPS53-214ENST00000572607 AGTP01019 485 aa8□□□□□ -1.13
VPS53-214ENST00000572607 FUCA1P04066 466 aa8□□□□□ -1.13
VPS53-214ENST00000572607 JMJD7P0C870 316 aa8□□□□□ -1.13
VPS53-214ENST00000572607 ZNF8P17098 575 aaPredicted RBP8□□□□□ -1.13
VPS53-214ENST00000572607 LPOP22079 712 aaPredicted RBP8□□□□□ -1.13
VPS53-214ENST00000572607 ALDH4A1P30038 563 aa8□□□□□ -1.13
VPS53-214ENST00000572607 ABCG1P45844 678 aa8□□□□□ -1.13
VPS53-214ENST00000572607 GPR3P46089 330 aa8□□□□□ -1.13
VPS53-214ENST00000572607 LMAN1P49257 510 aa8□□□□□ -1.13
VPS53-214ENST00000572607 PCBP4P57723 403 aaKnown RBP8□□□□□ -1.13
VPS53-214ENST00000572607 KLF1Q13351 362 aaPredicted RBP8□□□□□ -1.13
VPS53-214ENST00000572607 TAF1AQ15573 450 aaPredicted RBP8□□□□□ -1.13
VPS53-214ENST00000572607 PARP6Q2NL67 630 aa8□□□□□ -1.13
VPS53-214ENST00000572607 AMZ1Q400G9 498 aa8□□□□□ -1.13
VPS53-214ENST00000572607 LDLRAP1Q5SW96 308 aa8□□□□□ -1.13
VPS53-214ENST00000572607 CRTC3Q6UUV7 619 aa8□□□□□ -1.13
VPS53-214ENST00000572607 FAM151BQ6UXP7 276 aa8□□□□□ -1.13
VPS53-214ENST00000572607 ADGRG6Q86SQ4 1221 aa8□□□□□ -1.13
VPS53-214ENST00000572607 SLC9B2Q86UD5 537 aa8□□□□□ -1.13
VPS53-214ENST00000572607 PIM3Q86V86 326 aa8□□□□□ -1.13
VPS53-214ENST00000572607 C17orf82Q86X59 251 aaPredicted RBP8□□□□□ -1.13
VPS53-214ENST00000572607 LRRC8AQ8IWT6 810 aa8□□□□□ -1.13
VPS53-214ENST00000572607 TRIM48Q8IWZ4 208 aa8□□□□□ -1.13
VPS53-214ENST00000572607 FAM71DQ8N9W8 422 aa8□□□□□ -1.13
VPS53-214ENST00000572607 ZNF248Q8NDW4 579 aa8□□□□□ -1.13
VPS53-214ENST00000572607 DTX3LQ8TDB6 740 aa8□□□□□ -1.13
VPS53-214ENST00000572607 ANP32BQ92688 251 aaKnown RBP8□□□□□ -1.13
VPS53-214ENST00000572607 TMEM159Q96B96 161 aa8□□□□□ -1.13
VPS53-214ENST00000572607 SH3KBP1Q96B97 665 aa8□□□□□ -1.13
VPS53-214ENST00000572607 EID2BQ96D98 161 aa8□□□□□ -1.13
VPS53-214ENST00000572607 LIN37Q96GY3 246 aaPredicted RBP8□□□□□ -1.13
VPS53-214ENST00000572607 AHCYL2Q96HN2 611 aaKnown RBP8□□□□□ -1.13
VPS53-214ENST00000572607 VPS35Q96QK1 796 aa8□□□□□ -1.13
VPS53-214ENST00000572607 DPYSL5Q9BPU6 564 aa8□□□□□ -1.13
VPS53-214ENST00000572607 TBL1YQ9BQ87 522 aa8□□□□□ -1.13
VPS53-214ENST00000572607 APOL2Q9BQE5 337 aa8□□□□□ -1.13
VPS53-214ENST00000572607 LDHAL6BQ9BYZ2 381 aaPredicted RBP8□□□□□ -1.13
VPS53-214ENST00000572607 OSGEPL1Q9H4B0 414 aa8□□□□□ -1.13
VPS53-214ENST00000572607 LRRC40Q9H9A6 602 aa8□□□□□ -1.13
VPS53-214ENST00000572607 ARFGAP3Q9NP61 516 aa8□□□□□ -1.13
VPS53-214ENST00000572607 LZTFL1Q9NQ48 299 aa8□□□□□ -1.13
VPS53-214ENST00000572607 KLC4Q9NSK0 619 aa8□□□□□ -1.13
VPS53-214ENST00000572607 KCNK4Q9NYG8 393 aa8□□□□□ -1.13
VPS53-214ENST00000572607 IL17CQ9P0M4 197 aa8□□□□□ -1.13
VPS53-214ENST00000572607 ATXN10Q9UBB4 475 aa8□□□□□ -1.13
VPS53-214ENST00000572607 ATXN7L1Q9ULK2 861 aaPredicted RBP8□□□□□ -1.13
VPS53-214ENST00000572607 SATB2Q9UPW6 733 aa8□□□□□ -1.13
VPS53-214ENST00000572607 KCNK6Q9Y257 313 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms