RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP7.2□□□□□ -1.26
VPS4A-203ENST00000564399 AOPEPQ8N6M6 819 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 TMEM102Q8N9M5 508 aaPredicted RBP7.2□□□□□ -1.26
VPS4A-203ENST00000564399 UBXN4Q92575 508 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 CXorf40BQ96DE9 158 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 SGSM3Q96HU1 749 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 KCTD15Q96SI1 283 aaPredicted RBP7.2□□□□□ -1.26
VPS4A-203ENST00000564399 PCDHB18PQ96TA0 734 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 EIF3CQ99613 913 aaKnown RBP7.2□□□□□ -1.26
VPS4A-203ENST00000564399 SMAD5Q99717 465 aaKnown RBP7.2□□□□□ -1.26
VPS4A-203ENST00000564399 MGME1Q9BQP7 344 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 SNRNP25Q9BV90 132 aaKnown RBP7.2□□□□□ -1.26
VPS4A-203ENST00000564399 ILKAPQ9H0C8 392 aaPredicted RBP7.2□□□□□ -1.26
VPS4A-203ENST00000564399 OR2AG1Q9H205 316 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 CARD9Q9H257 536 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 CHST8Q9H2A9 424 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 FAM83DQ9H4H8 585 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 ARFGAP3Q9NP61 516 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 NT5MQ9NPB1 228 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 FGF21Q9NSA1 209 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 ZNF624Q9P2J8 865 aaPredicted RBP7.2□□□□□ -1.26
VPS4A-203ENST00000564399 ITGB1BP2Q9UKP3 347 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 CNOT6Q9ULM6 557 aaKnown RBP7.2□□□□□ -1.26
VPS4A-203ENST00000564399 B3GNT3Q9Y2A9 372 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 DNAJC16Q9Y2G8 782 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 PPIL1Q9Y3C6 166 aa7.2□□□□□ -1.26
VPS4A-203ENST00000564399 IGHV5-51A0A0C4DH38 117 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 A0A0J9YYE9 177 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 FADS2P1A8MWK0 482 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 LRRTM2O43300 516 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 ZG16O60844 167 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 SCRG1O75711 98 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 TRBC1P01850 177 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 ZNF8P17098 575 aaPredicted RBP7.19□□□□□ -1.26
VPS4A-203ENST00000564399 PSMA2P25787 234 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 RPL10P27635 214 aaKnown RBP7.19□□□□□ -1.26
VPS4A-203ENST00000564399 HNRNPH3P31942 346 aaKnown RBP7.19□□□□□ -1.26
VPS4A-203ENST00000564399 SOX5P35711 763 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 GLRBP48167 497 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 CLCNKAP51800 687 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 VAV2P52735 878 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 POLR2FP61218 127 aaKnown RBP7.19□□□□□ -1.26
VPS4A-203ENST00000564399 PPP1CAP62136 330 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 OGDHQ02218 1023 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 GPS2Q13227 327 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 LAMB3Q13751 1172 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 GPR18Q14330 331 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 ZRSR2Q15696 482 aaKnown RBP7.19□□□□□ -1.26
VPS4A-203ENST00000564399 CLEC16AQ2KHT3 1053 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 PPP1R15BQ5SWA1 713 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 ZNF648Q5T619 568 aaPredicted RBP7.19□□□□□ -1.26
VPS4A-203ENST00000564399 VWA5B1Q5TIE3 1220 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 CERS6Q6ZMG9 384 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 ATPAF2Q8N5M1 289 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 ENDOVQ8N8Q3 282 aaKnown RBP7.19□□□□□ -1.26
VPS4A-203ENST00000564399 GLIS1Q8NBF1 620 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 ADAMTS17Q8TE56 1095 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 UBE2Q2Q8WVN8 375 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 SLC41A2Q96JW4 573 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 ZNF514Q96K75 400 aaPredicted RBP7.19□□□□□ -1.26
VPS4A-203ENST00000564399 MAP3K3Q99759 626 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 SLC40A1Q9NP59 571 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 NLRC4Q9NPP4 1024 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 AGPAT4Q9NRZ5 378 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 KCND1Q9NSA2 647 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 FAM207AQ9NSI2 230 aaPredicted RBP7.19□□□□□ -1.26
VPS4A-203ENST00000564399 POT1Q9NUX5 634 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 TMEM63CQ9P1W3 806 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 C5AR2Q9P296 337 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 ATXN10Q9UBB4 475 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 TRIM10Q9UDY6 481 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 EPHA6Q9UF33 1036 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 TCFL5Q9UL49 500 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 DNPEPQ9ULA0 475 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 OSGIN2Q9Y236 505 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 CHKBQ9Y259 395 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 ADGRG4Q8IZF6 3080 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 CSMD1Q96PZ7 3565 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 PDZD2O15018 2839 aa7.19□□□□□ -1.26
VPS4A-203ENST00000564399 C1orf232A0A0U1RR37 186 aa7.18□□□□□ -1.26
VPS4A-203ENST00000564399 TCRBV5S1A1TA0A578 114 aa7.18□□□□□ -1.26
VPS4A-203ENST00000564399 UBA6A0AVT1 1052 aaPredicted RBP7.18□□□□□ -1.26
VPS4A-203ENST00000564399 HEATR9A2RTY3 570 aa7.18□□□□□ -1.26
VPS4A-203ENST00000564399 OR52A4PA6NMU1 304 aa7.18□□□□□ -1.26
VPS4A-203ENST00000564399 KMOO15229 486 aa7.18□□□□□ -1.26
VPS4A-203ENST00000564399 PRPSAP2O60256 369 aa7.18□□□□□ -1.26
VPS4A-203ENST00000564399 FZD6O60353 706 aa7.18□□□□□ -1.26
VPS4A-203ENST00000564399 RNF8O76064 485 aa7.18□□□□□ -1.26
VPS4A-203ENST00000564399 SLC25A14O95258 325 aaPredicted RBP7.18□□□□□ -1.26
VPS4A-203ENST00000564399 PEX11BO96011 259 aa7.18□□□□□ -1.26
VPS4A-203ENST00000564399 JCHAINP01591 159 aa7.18□□□□□ -1.26
VPS4A-203ENST00000564399 ALPPP05187 535 aa7.18□□□□□ -1.26
VPS4A-203ENST00000564399 RAB40ALP0C0E4 278 aa7.18□□□□□ -1.26
VPS4A-203ENST00000564399 ZNF7P17097 686 aaPredicted RBP7.18□□□□□ -1.26
VPS4A-203ENST00000564399 IDSP22304 550 aa7.18□□□□□ -1.26
VPS4A-203ENST00000564399 HCAR3P49019 387 aa7.18□□□□□ -1.26
VPS4A-203ENST00000564399 SPINT3P49223 89 aa7.18□□□□□ -1.26
VPS4A-203ENST00000564399 DRG2P55039 364 aaKnown RBP7.18□□□□□ -1.26
VPS4A-203ENST00000564399 CDH6P55285 790 aa7.18□□□□□ -1.26
VPS4A-203ENST00000564399 GSDMDP57764 484 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 102.8 ms