RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ATXN1LP0C7T5 689 aaKnown RBP5.09□□□□□ -1.59
VPS35-205ENST00000563984 ELFN1P0C7U0 828 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 ZCCHC18P0CG32 403 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 MYBP10242 640 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 NR2F1P10589 423 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 TYMPP19971 482 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 RAB4AP20338 218 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 PDHA2P29803 388 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 SLC15A1P46059 708 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 PITPNBP48739 271 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 CAMLGP49069 296 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 CCT3P49368 545 aaKnown RBP5.09□□□□□ -1.59
VPS35-205ENST00000563984 ZNF41P51814 821 aaPredicted RBP5.09□□□□□ -1.59
VPS35-205ENST00000563984 LOXL3P58215 753 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 RAB4BP61018 213 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 LIPEQ05469 1076 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 CHAF1BQ13112 559 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 DDX39BQ13838 428 aaKnown RBP5.09□□□□□ -1.59
VPS35-205ENST00000563984 BOP1Q14137 746 aaKnown RBP5.09□□□□□ -1.59
VPS35-205ENST00000563984 LLGL1Q15334 1064 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 SGCAQ16586 387 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 ADCK5Q3MIX3 580 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 DNAL1Q4LDG9 190 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 ZCWPW2Q504Y3 356 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 PLEKHO1Q53GL0 409 aaPredicted RBP5.09□□□□□ -1.59
VPS35-205ENST00000563984 FAM209BQ5JX69 171 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 RARS2Q5T160 578 aaKnown RBP5.09□□□□□ -1.59
VPS35-205ENST00000563984 TSTD2Q5T7W7 516 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 METAP1DQ6UB28 335 aaPredicted RBP5.09□□□□□ -1.59
VPS35-205ENST00000563984 LAYNQ6UX15 382 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 B3GNT9Q6UX72 402 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 ISLR2Q6UXK2 745 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 UTS2BQ765I0 119 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 RABEPKQ7Z6M1 372 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 DTX2Q86UW9 622 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 PLA2G4DQ86XP0 818 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 CLEC4FQ8N1N0 589 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 FBXW8Q8N3Y1 598 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 NATD1Q8N6N6 113 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 ARFGAP1Q8N6T3 406 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 TSPYL6Q8N831 410 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 FANCBQ8NB91 859 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 C11orf65Q8NCR3 313 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 CNNM3Q8NE01 707 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 SRFBP1Q8NEF9 429 aaKnown RBP5.09□□□□□ -1.59
VPS35-205ENST00000563984 RAB3IL1Q8TBN0 382 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 AFG1LQ8WV93 481 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 NELFBQ8WX92 580 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 HTRA1Q92743 480 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 SARAFQ96BY9 339 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 RHBDF1Q96CC6 855 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 CALML4Q96GE6 196 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 FEM1CQ96JP0 617 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 SLC46A1Q96NT5 459 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 HAPLN3Q96S86 360 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 MMS19Q96T76 1030 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 FAM118BQ9BPY3 351 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 ZNF518BQ9C0D4 1074 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 MIS12Q9H081 205 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 OR51B5Q9H339 312 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 HIPK3Q9H422 1215 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 CPNE5Q9HCH3 593 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 TRPC7Q9HCX4 862 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 IL1RAPL2Q9NP60 686 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 RMND1Q9NWS8 449 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 COPG2Q9UBF2 871 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 GRHPRQ9UBQ7 328 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 AFF4Q9UHB7 1163 aaKnown RBP5.09□□□□□ -1.59
VPS35-205ENST00000563984 VPS51Q9UID3 782 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 SPATA2Q9UM82 520 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 PCDHA6Q9UN73 950 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 ERVK-11Q9UQG0 969 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 KLHL20Q9Y2M5 609 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 AP3M1Q9Y2T2 418 aa5.09□□□□□ -1.59
VPS35-205ENST00000563984 VIRMAQ69YN4 1812 aaKnown RBP5.09□□□□□ -1.6
VPS35-205ENST00000563984 LAMC3Q9Y6N6 1575 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 MRC2Q9UBG0 1479 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 CPDO75976 1380 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 GSTTP1A0A1W2PQM5 241 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 VWA3AA6NCI4 1184 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 PRSS44E7EML9 344 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 PPEF2O14830 753 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 BET1O15155 118 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 HCRTR2O43614 444 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 TOM1L1O75674 476 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 CIAO1O76071 339 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 TMEM63AO94886 807 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 UBXN7O94888 489 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 NXPH3O95157 252 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 UNC5CO95185 931 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 CSTAP01040 98 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 CSF2P04141 144 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 GRPP07492 148 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 FHP07954 510 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 RHOP08100 348 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 SERPINF2P08697 491 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 NR2F6P10588 404 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 GHRP10912 638 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 RALBP11234 206 aa5.08□□□□□ -1.6
VPS35-205ENST00000563984 APEHP13798 732 aaKnown RBP5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms