RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 ZNF789Q5FWF6 425 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 DNTTIP2Q5QJE6 756 aaKnown RBP9.67□□□□□ -0.86
CLK3-208ENST00000562626 PDPK2PQ6A1A2 396 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 KIAA0930Q6ICG6 404 aaPredicted RBP9.67□□□□□ -0.86
CLK3-208ENST00000562626 CASC4Q6P4E1 433 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 TRMT10BQ6PF06 316 aaKnown RBP9.67□□□□□ -0.86
CLK3-208ENST00000562626 IL27RAQ6UWB1 636 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 DET1Q7L5Y6 550 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 PHYKPLQ8IUZ5 450 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 CLDN19Q8N6F1 224 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 OR6P1Q8NGX9 317 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 LMX1AQ8TE12 382 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 CFAP36Q96G28 342 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 EBNA1BP2Q99848 306 aaKnown RBP9.67□□□□□ -0.86
CLK3-208ENST00000562626 C19orf43Q9BQ61 176 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 RHOXF2Q9BQY4 288 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 RAB17Q9H0T7 212 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 TRIM39Q9HCM9 518 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 GULP1Q9UBP9 304 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 CRLS1Q9UJA2 301 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 APPL1Q9UKG1 709 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 UTP11Q9Y3A2 253 aaKnown RBP9.67□□□□□ -0.86
CLK3-208ENST00000562626 MAD1L1Q9Y6D9 718 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 RPS6KL1Q9Y6S9 549 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 U3KQA8 63 aa9.67□□□□□ -0.86
CLK3-208ENST00000562626 PRR19A6NJB7 356 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 GIPC1O14908 333 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 YY2O15391 372 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 AQP9O43315 295 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 SH3BP5O60239 455 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 PCDHGA12O60330 932 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 CBFA2T3O75081 653 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 PIAS1O75925 651 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 TNFP01375 233 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 ITGALP20701 1170 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 CARSP49589 748 aaKnown RBP9.66□□□□□ -0.86
CLK3-208ENST00000562626 LIMK1P53667 647 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 DRG2P55039 364 aaKnown RBP9.66□□□□□ -0.86
CLK3-208ENST00000562626 CTBSQ01459 385 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 CBLBQ13191 982 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 CRYMQ14894 314 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 RSPO4Q2I0M5 234 aaPredicted RBP9.66□□□□□ -0.86
CLK3-208ENST00000562626 DEFB133Q30KQ1 61 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 ZDHHC20Q5W0Z9 365 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 STEAP4Q687X5 459 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 AFTPHQ6ULP2 937 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 UNC5AQ6ZN44 842 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 FAM83HQ6ZRV2 1179 aaPredicted RBP9.66□□□□□ -0.86
CLK3-208ENST00000562626 CENPUQ71F23 418 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 NLRP9Q7RTR0 991 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 TAS2R42Q7RTR8 314 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 PIP4P1Q86T03 277 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 DENND6AQ8IWF6 608 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 GSPT2Q8IYD1 628 aaKnown RBP9.66□□□□□ -0.86
CLK3-208ENST00000562626 LILRA3Q8N6C8 439 aaPredicted RBP9.66□□□□□ -0.86
CLK3-208ENST00000562626 EID2Q8N6I1 236 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 FBXO36Q8NEA4 188 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 OR4L1Q8NH43 312 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 GDAP1Q8TB36 358 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 BAHD1Q8TBE0 780 aaPredicted RBP9.66□□□□□ -0.86
CLK3-208ENST00000562626 LKAAEAR1Q8TD35 194 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 PATE1Q8WXA2 126 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 PEX13Q92968 403 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 SKA1Q96BD8 255 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 SGF29Q96ES7 293 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 OR2M4Q96R27 311 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 SAYSD1Q9NPB0 183 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 RRAGDQ9NQL2 400 aaPredicted RBP9.66□□□□□ -0.86
CLK3-208ENST00000562626 SMYD2Q9NRG4 433 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 CATSPERZQ9NTU4 200 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 SPATS2LQ9NUQ6 558 aaKnown RBP9.66□□□□□ -0.86
CLK3-208ENST00000562626 VPS18Q9P253 973 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 ZNHIT2Q9UHR6 403 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 KCNK6Q9Y257 313 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 GPSM3Q9Y4H4 160 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 SLC30A1Q9Y6M5 507 aa9.66□□□□□ -0.86
CLK3-208ENST00000562626 AP3B1O00203 1094 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 SLC30A4O14863 429 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 CD3EAPO15446 510 aaKnown RBP9.65□□□□□ -0.86
CLK3-208ENST00000562626 GRID2O43424 1007 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 SIGLEC6O43699 453 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 USP1O94782 785 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 CDK14O94921 469 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 C1QAP02745 245 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 MYBL2P10244 700 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 ERVK-10P10266 1014 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 ACP5P13686 325 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 PGAM1P18669 254 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 KELP23276 732 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 SSTR1P30872 391 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 AKT1P31749 480 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 ABCG1P45844 678 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 ARRB1P49407 418 aaPredicted RBP9.65□□□□□ -0.86
CLK3-208ENST00000562626 ARL4CP56559 192 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 GPX6P59796 221 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 HNRNPKP61978 463 aaKnown RBP eCLIP9.65□□□□□ -0.86
CLK3-208ENST00000562626 PRAMEP78395 509 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 MPP1Q00013 466 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 CALCOCO2Q13137 446 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 CTBP1Q13363 440 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms